View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13759_high_4 (Length: 243)
Name: NF13759_high_4
Description: NF13759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13759_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4953794 - 4954028
Alignment:
| Q |
1 |
acataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatatgagccatcagatcttta |
100 |
Q |
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| T |
4953794 |
acataaaacatgtcaaaatcaattcaaacaagcacacagtcttaaccatcactgaatcaactttaaaatacaactcgaaatatgagctgtcagatcttta |
4953893 |
T |
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| Q |
101 |
tggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttgggaagtttaagatgatctggggtgaca |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
4953894 |
tggaattgcgtgattacagataatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttggggagtttgagatgatctggggtgaca |
4953993 |
T |
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| Q |
201 |
ggttttcgcaattcattggagggtagttgatgatg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
4953994 |
ggttttcgcaattcattggagggtagttgatgatg |
4954028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4938085 - 4938319
Alignment:
| Q |
1 |
acataaaacatgtcaaaatcaattcaaacaagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatatgagccatcagatcttta |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
4938085 |
acataaaacatgtcaaaatcaattcaaataagcacgcagtcttaaccatcactgaatcaactttaaaatacaactcgaaatatgagccgtcggatcttta |
4938184 |
T |
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| Q |
101 |
tggaattgcgtgattacagagaatctaatataaaagacaaggtagatacctttcaggatatttgaatggtttgggaagtttaagatgatctggggtgaca |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||| |||||||||| |
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| T |
4938185 |
tggaattgcgtcattacagagaatctaatataaaagacaaggtagatacctttcaagatatttgaatggtttggggagtttgagatgatatggggtgaca |
4938284 |
T |
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| Q |
201 |
ggttttcgcaattcattggagggtagttgatgatg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
4938285 |
ggttttcgcaattcattggagggtagttgatgatg |
4938319 |
T |
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