View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13759_low_1 (Length: 361)
Name: NF13759_low_1
Description: NF13759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13759_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 356
Target Start/End: Original strand, 37960218 - 37960556
Alignment:
| Q |
18 |
attctagacctctcaagagccaaaccaacttcaattccacctccgccatctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaactgcat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37960218 |
attctagacctctcaagagccaaaccaacttcaattccacctccgccgtctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaacagcat |
37960317 |
T |
|
| Q |
118 |
cagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37960318 |
cagatttcttaggcttcccccacccaaaatctgtctcataaacagccaatttcggtgaaccagcaaccacagttacagacttaccaggttttgacatttc |
37960417 |
T |
|
| Q |
218 |
cctataatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatcccattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37960418 |
cctataatcagacatcaatgtttcagctcctaacaaagcatgactctttaaatgtcttatcttcttttcgataccaattgaagccgaaacaatcccattt |
37960517 |
T |
|
| Q |
318 |
tttccaattaactcatctctctttacagccacagtataa |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
37960518 |
tttccaattaactcatctctctttacagccacggtataa |
37960556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 37954409 - 37954613
Alignment:
| Q |
18 |
attctagacctctcaagagccaaaccaacttcaattccacctccgccatctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaactgcat |
117 |
Q |
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||||||||||||||||||| ||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37954409 |
attctagacctctcaagagtcaaaccaaccttaattccacctccaccacctctacaatcagaaagagaaatcgaaccggatgaatcaagatgaactgcat |
37954508 |
T |
|
| Q |
118 |
cagatttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttc |
217 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||| | | |||||||||||||||||||||||| |
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| T |
37954509 |
cagatttcttaggcttcccccatccaaaatctgtctcataaacagccaaattcggtgaaccagcaatcacattaacagacttaccaggttttgacatttc |
37954608 |
T |
|
| Q |
218 |
cctat |
222 |
Q |
| |
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||||| |
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| T |
37954609 |
cctat |
37954613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 23 - 356
Target Start/End: Complemental strand, 37915972 - 37915639
Alignment:
| Q |
23 |
agacctctcaagagccaaaccaacttcaattccacctccgccatctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaactgcatcagat |
122 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||| |||| ||| |
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| T |
37915972 |
agacctctcaagagccaaaccaacctcaattccacctcgaccatctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggat |
37915873 |
T |
|
| Q |
123 |
ttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctat |
222 |
Q |
| |
|
||||| || || |||||||||||||| || ||||||||| | | ||| || || |||| ||||| | | ||| ||||| |||||| |||||||||| |
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| T |
37915872 |
ttctttggttttccccacccaaaatcagtctcataaacatcaagtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctat |
37915773 |
T |
|
| Q |
223 |
aatcagacatcaatgtttcagctcctaacaaagcatgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatcccattttttcc |
322 |
Q |
| |
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|||||| |||||| |||||| |||| ||||| |||| |||||| |||| |||||||||| ||||||| || ||| ||| || ||| |||| |||||| |
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| T |
37915772 |
aatcaggcatcaacgtttcaactcccaacaaggcatcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttcc |
37915673 |
T |
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| Q |
323 |
aattaactcatctctctttacagccacagtataa |
356 |
Q |
| |
|
|| ||||||| | || |||||| | ||||||||| |
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| T |
37915672 |
aactaactcacccctatttacaactacagtataa |
37915639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 63 - 290
Target Start/End: Complemental strand, 37907779 - 37907552
Alignment:
| Q |
63 |
ccatctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaactgcatcagatttcttaggcttcccccacccaaaatctgtatcataaacag |
162 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||| || || |||||||||||||| || ||| ||||| |
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|
| T |
37907779 |
ccatctctacaatcagaaagagaaatcgaacggaacgaatcaatatgcactgcatcagatttctttggttttccccacccaaaatcagtctcacaaacat |
37907680 |
T |
|
| Q |
163 |
ccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgact |
262 |
Q |
| |
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| | ||| ||||| ||||||||||| || || |||||||||||| | | |||| ||||||||| ||||| ||||||||| |||||||||||| ||| |
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| T |
37907679 |
caagtttaggtgacccagcaaccactacaaatgagttaccaggttttaataattccatataatcaggtatcaacgtttcagcttctaacaaagcatcact |
37907580 |
T |
|
| Q |
263 |
cttaaaatgtcttatcttcttttcaata |
290 |
Q |
| |
|
|||||||| |||||||||||||| |||| |
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|
| T |
37907579 |
cttaaaatctcttatcttcttttaaata |
37907552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 350
Target Start/End: Complemental strand, 3784117 - 3783787
Alignment:
| Q |
29 |
ctcaagagccaaaccaacttcaattccacctccgccatctctacaatcagaaagagaaat------cgaaccggacgaatcaagatgaactgcatcagat |
122 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
3784117 |
ctcaagagccaaaccaacctgaattccacctccaccatctctacaatcagaaagagaaatagaaatcgaagacgacgaatcaagatgaactgcatcagat |
3784018 |
T |
|
| Q |
123 |
ttcttaggcttcccccacccaaaatctgtatcataaacagccaatttcggtgaaccagcaaccacagttaaagacttaccaggttttgacatttccctat |
222 |
Q |
| |
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|| ||||||||||||||||| || || || ||||||||| | ||||| ||||| ||||||| | | |||||||||||||||||| | ||| |||| |
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| T |
3784017 |
tttttaggcttcccccacccgaagtcagtctcataaacatcaaatttaggtgagccagcaattcctacaacagacttaccaggttttgataattcactat |
3783918 |
T |
|
| Q |
223 |
aatcagacatcaatgtttcagctcctaacaaagc---atgactcttaaaatgtcttatcttcttttcaataccaattgaagccgaaacaatcccattttt |
319 |
Q |
| |
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|||||| || | || || ||||||||||| || |||||| |||| |||||||||| |||| |||||| ||| ||||| ||||||||||||| | |
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| T |
3783917 |
gatcagaagtccaccatttaggacctaacaaagcattatcactcttgaaatctcttatcttcctttcgataccatttgcagccgcaacaatcccatttgt |
3783818 |
T |
|
| Q |
320 |
tccaattaactcatctctctttacagccaca |
350 |
Q |
| |
|
||||| ||||||| | ||||||||| ||||| |
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|
| T |
3783817 |
tccaactaactcagccctctttacaaccaca |
3783787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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