View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13759_low_2 (Length: 247)

Name: NF13759_low_2
Description: NF13759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13759_low_2
NF13759_low_2
[»] scaffold0091 (3 HSPs)
scaffold0091 (147-247)||(29057-29157)
scaffold0091 (14-84)||(28922-28994)
scaffold0091 (14-71)||(24725-24782)
[»] chr6 (4 HSPs)
chr6 (147-247)||(14989390-14989490)
chr6 (149-247)||(14980278-14980376)
chr6 (14-71)||(14980460-14980517)
chr6 (147-184)||(10906902-10906939)
[»] scaffold0218 (2 HSPs)
scaffold0218 (148-247)||(14378-14477)
scaffold0218 (22-79)||(14250-14307)
[»] chr3 (10 HSPs)
chr3 (154-247)||(16642304-16642397)
chr3 (149-247)||(4712815-4712913)
chr3 (147-242)||(14062798-14062893)
chr3 (154-241)||(14055058-14055145)
chr3 (14-71)||(16642138-16642195)
chr3 (154-247)||(13926863-13926957)
chr3 (14-71)||(4712997-4713054)
chr3 (14-71)||(14062983-14063040)
chr3 (13-71)||(14055222-14055280)
chr3 (13-50)||(14481800-14481837)
[»] chr1 (5 HSPs)
chr1 (147-247)||(13882251-13882351)
chr1 (147-247)||(51658677-51658777)
chr1 (14-71)||(13882464-13882521)
chr1 (13-70)||(51658854-51658911)
chr1 (162-237)||(1567090-1567166)
[»] chr7 (9 HSPs)
chr7 (147-241)||(48376787-48376881)
chr7 (147-241)||(16060512-16060606)
chr7 (14-84)||(16060379-16060449)
chr7 (147-247)||(4531764-4531865)
chr7 (14-71)||(9080211-9080268)
chr7 (14-64)||(48376642-48376692)
chr7 (13-66)||(16069010-16069063)
chr7 (147-184)||(9080338-9080375)
chr7 (25-66)||(41744134-41744175)
[»] scaffold0003 (2 HSPs)
scaffold0003 (147-222)||(130795-130870)
scaffold0003 (14-71)||(130638-130695)
[»] scaffold0063 (2 HSPs)
scaffold0063 (14-84)||(28443-28513)
scaffold0063 (147-185)||(28342-28380)
[»] scaffold1269 (1 HSPs)
scaffold1269 (170-242)||(1-73)
[»] chr8 (6 HSPs)
chr8 (147-247)||(23658526-23658634)
chr8 (147-210)||(23657751-23657814)
chr8 (14-68)||(23657653-23657707)
chr8 (14-68)||(23658428-23658482)
chr8 (205-247)||(23657827-23657869)
chr8 (13-66)||(17862246-17862299)
[»] chr2 (2 HSPs)
chr2 (162-247)||(23656475-23656561)
chr2 (13-66)||(23907791-23907844)
[»] scaffold0061 (1 HSPs)
scaffold0061 (14-71)||(18099-18156)
[»] scaffold0319 (1 HSPs)
scaffold0319 (193-247)||(13585-13639)
[»] scaffold1043 (1 HSPs)
scaffold1043 (13-66)||(1427-1480)
[»] chr5 (3 HSPs)
chr5 (13-66)||(25756783-25756836)
chr5 (13-66)||(25790965-25791018)
chr5 (13-56)||(24832209-24832252)
[»] chr4 (2 HSPs)
chr4 (168-238)||(3576240-3576311)
chr4 (13-66)||(19728447-19728500)
[»] scaffold0170 (1 HSPs)
scaffold0170 (13-66)||(17253-17306)


Alignment Details
Target: scaffold0091 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 29057 - 29157
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 246  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  29057 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 29156  T
Q  247 c 247  Q
    |    
T  29157 c 29157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 28922 - 28994
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtca--atatatatatttacacaccaccc 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28922 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatatttacacaccaccc 28994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 24725 - 24782
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24725 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 24782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 14989490 - 14989390
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 246  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  14989490 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 14989391  T
Q  247 c 247  Q
    |    
T  14989390 c 14989390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 14980376 - 14980278
Alignment:
Q  149 catcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 247  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  14980376 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattc 14980278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 14980517 - 14980460
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980517 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 14980460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Complemental strand, 10906939 - 10906902
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcat 184  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  10906939 ctcatcatcactaaaatataaacattatcatttctcat 10906902  T

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Target: scaffold0218 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 14378 - 14477
Alignment:
Q  148 tcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 247  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  14378 tcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 14477  T

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Target: scaffold0218; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 14250 - 14307
Alignment:
Q  22 aagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacac 79  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  14250 aagtcatcatcataattatacgtcatcattgtcatagtcaatatatatatatacacac 14307  T

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Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 16642304 - 16642397
Alignment:
Q  154 tcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  16642304 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggattc 16642397  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 4712913 - 4712815
Alignment:
Q  149 catcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 247  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  4712913 catcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatatattatcttcgtcatcactcttcgtcacattatggattc 4712815  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 14062893 - 14062798
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatg 242  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  14062893 ctcatcataactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatg 14062798  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 154 - 241
Target Start/End: Complemental strand, 14055145 - 14055058
Alignment:
Q  154 tcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||    
T  14055145 tcactaacatataaacattatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcgcattat 14055058  T

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Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 16642138 - 16642195
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642138 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 16642195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 13926957 - 13926863
Alignment:
Q  154 tcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtattc 247  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||| || |||||||||||  | ||||||||||||| |||||||||| ||||    
T  13926957 tcactaaaatataaacattatcatttctcatcgtatttatttatttaaatatatataatatcaattgtcatcactcttcatcacattatggattc 13926863  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 4713054 - 4712997
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4713054 catcattcaagttatcatcataattatacgtcgtcattctcatagtcaatatatatat 4712997  T

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Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 14063040 - 14062983
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  14063040 catcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 14062983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 14055280 - 14055222
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  14055280 tcatcattcaagtcatcatcataattatacgtcatcattatcatcgtcaatatatatat 14055222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 14481837 - 14481800
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcat 50  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  14481837 tcatcattcaaatcatcatcataattatacatcgtcat 14481800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 13882351 - 13882251
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 246  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||    
T  13882351 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacaatatggatt 13882252  T
Q  247 c 247  Q
    |    
T  13882251 c 13882251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 51658777 - 51658677
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtatt 246  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  51658777 ctcatcatcactaacatataaatattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattatggatt 51658678  T
Q  247 c 247  Q
    |    
T  51658677 c 51658677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 13882521 - 13882464
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13882521 catcattcaagtcatcatcataattatacgtcgtcattctcattgtctatatatatat 13882464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 51658911 - 51658854
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatata 70  Q
    ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  51658911 tcatcgttcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatata 51658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 1567166 - 1567090
Alignment:
Q  162 atataaacattatcatttctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcaca 237  Q
    ||||||| ||| ||||||||||||||||||||||  |||||| |||||||||||  |||||||||||||| ||||||    
T  1567166 atataaatattgtcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcaca 1567090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 48376787 - 48376881
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattat 241  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48376787 ctcatcatcaataacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtcatcactcttcgtcacattat 48376881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 16060512 - 16060606
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattat 241  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| || |||||||||    
T  16060512 ctcatcatcactaacatataaacattatcatttctcatcatatttatttaattacatatatataatatcttcgtcatcactcctcatcacattat 16060606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 16060379 - 16060449
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 84  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060379 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 16060449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 4531865 - 4531764
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtat 245  Q
    |||||| ||| ||| |||||| |||||| ||||||||| ||||||||||| |||||| |||||||||||  | |||||||||||||||||||||||| ||    
T  4531865 ctcatcatcaataaaatataagcattattatttctcattgtatttatttatttacatatatataatatcaattgtcatcactcttcgtcacattatggat 4531766  T
Q  246 tc 247  Q
    ||    
T  4531765 tc 4531764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 9080211 - 9080268
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  9080211 catcattcaagtcatcatcataattatacgtcatcattctcatcgtcaatatatatat 9080268  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 48376642 - 48376692
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaata 64  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  48376642 catcatttaagtcatcatcataattatacgtcatcattctcatagtcaata 48376692  T

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Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 16069063 - 16069010
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  16069063 tcatcattcaaatcatcatcataattatacgtcatcattctcatcgtcaatata 16069010  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 9080338 - 9080375
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcat 184  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9080338 ctcatcatcactaacatataaacattatcatttctcat 9080375  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 41744134 - 41744175
Alignment:
Q  25 tcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||||||| ||||||||||||||||  ||||||||    
T  41744134 tcatcatcataattagacgtcgtcattctcatcatcaatata 41744175  T

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Target: scaffold0003 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 130795 - 130870
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatataatatcttcgtca 222  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  130795 ctcatcatcactaacatataaacattatcatttctcatcgtatttatttaattacatatatataatatcttcgtca 130870  T

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Target: scaffold0003; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 130638 - 130695
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130638 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 130695  T

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Target: scaffold0063 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 28513 - 28443
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 84  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28513 catcattcaattcatcatcataattatacgtcgtcattctcatagtcaatatatatatttacacaccaccc 28443  T

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Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 28380 - 28342
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatc 185  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  28380 ctcatcatcactaacatataaacatcatcatttctcatc 28342  T

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Target: scaffold1269 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 170 - 242
Target Start/End: Original strand, 1 - 73
Alignment:
Q  170 attatcatttctcatcgtatttatttaattacatgtatataatatcttcgtcatcactcttcgtcacattatg 242  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  1 attatcatttctcatcgtatttatttaattacatatgtataatatcttcgtcatcactcttcgtcacattatg 73  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 23658526 - 23658634
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattac--------atgtatataatatcttcgtcatcactcttcgtcacat 238  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||        || ||||||||||||||||||||||||||||||||||    
T  23658526 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacacacacatatatatataatatcttcgtcatcactcttcgtcacat 23658625  T
Q  239 tatgtattc 247  Q
    |||| ||||    
T  23658626 tatggattc 23658634  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 23657751 - 23657814
Alignment:
Q  147 ctcatcttcactaacatataaacattatcatttctcatcgtatttatttaattacatgtatata 210  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  23657751 ctcatcatcactaacatataaacattataatttctcatcgtatttatttaattacatatatata 23657814  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 23657653 - 23657707
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23657653 catcattcaagtcatcatcataattatacgtcgtcattctcatagtctatatata 23657707  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 23658428 - 23658482
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatata 68  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  23658428 catcattcaagtcatcatcataattataagtcgtcattctcatagtctatatata 23658482  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 247
Target Start/End: Original strand, 23657827 - 23657869
Alignment:
Q  205 tatataatatcttcgtcatcactcttcgtcacattatgtattc 247  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  23657827 tatataatatcttcgtcatcactcttcgtcacattatggattc 23657869  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 17862299 - 17862246
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||| |||||||||||||||||| |  |||||||||| |||||||||    
T  17862299 tcatcattcaaatcatcatcataattataccttatcattctcatcgtcaatata 17862246  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 23656561 - 23656475
Alignment:
Q  162 atataaacattatcatttctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacattatgtattc 247  Q
    ||||||| ||||||||||||||| ||||||||||| || ||| |||||||||||  |||||||||||||||||||||||||| ||||    
T  23656561 atataaatattatcatttctcattgtatttatttactttcatatatataatatcaatcgtcatcactcttcgtcacattatggattc 23656475  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 23907791 - 23907844
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||| | |||||||||| |||||||| |||||||||| |||||||||    
T  23907791 tcatcattcaaattatcatcataaatatacgtcatcattctcatcgtcaatata 23907844  T

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Target: scaffold0061 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 18156 - 18099
Alignment:
Q  14 catcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatatatatat 71  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  18156 catcattcaagtcatcatcataatcatacttcgtcattctcatagtcaatatatatat 18099  T

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Target: scaffold0319 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 13639 - 13585
Alignment:
Q  193 tttaattacatgtatataatatcttcgtcatcactcttcgtcacattatgtattc 247  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||    
T  13639 tttaattacatatatataatatcttcgtcatcactctttgtcacatcatggattc 13585  T

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Target: scaffold1043 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 1480 - 1427
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  1480 tcatcattcaaatcatcatcataattatacgttatcattctcatcgtcaatata 1427  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 25756836 - 25756783
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25756836 tcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25756783  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 25790965 - 25791018
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||    
T  25790965 tcatcattcaaatcatcatcataattataagtcatcattctcatcgtcaatata 25791018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 24832252 - 24832209
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcat 56  Q
    ||||||||||| |||||||||||||||||| || ||||||||||    
T  24832252 tcatcattcaaatcatcatcataattatacatcatcattctcat 24832209  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 3576311 - 3576240
Alignment:
Q  168 acattatcatttctcatcgtatttatttaattacatgtatataatatc-ttcgtcatcactcttcgtcacat 238  Q
    |||| ||||| ||||||||||||||||||  ||||| ||||||| |||  ||||||||||||||||||||||    
T  3576311 acatcatcatctctcatcgtatttatttatatacatttatataaaatcaatcgtcatcactcttcgtcacat 3576240  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 19728500 - 19728447
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||| |||||||||||||||||| |  |||||||||| || ||||||    
T  19728500 tcatcattcaaatcatcatcataattatactttatcattctcatcgttaatata 19728447  T

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Target: scaffold0170 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 17253 - 17306
Alignment:
Q  13 tcatcattcaagtcatcatcataattatacgtcgtcattctcatagtcaatata 66  Q
    ||||||||||| | |||||||||| |||||| | |||||||||| |||||||||    
T  17253 tcatcattcaaattatcatcataaatatacgccatcattctcatcgtcaatata 17306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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