View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13759_low_3 (Length: 246)
Name: NF13759_low_3
Description: NF13759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13759_low_3 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 15727286 - 15727529
Alignment:
| Q |
3 |
gtgataagaacgttgttggagggtctgcgaatccaagggtgccatggaattcataaaacacttgattttccttctctgtgnnnnnnnnctataaatatat |
102 |
Q |
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| T |
15727286 |
gtgaaaagaacgttgttggagggtctgcgaatccaagggtgccatggagttcataaaacacttgattttccttctctatgaaaaaaaactataaatatat |
15727385 |
T |
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| Q |
103 |
atgctccgactttatataaatacaagaagagattgcaaggtaaaactagcttgtatgaatgtaaaataaagagccaaaagagcacctattgtagaaagtc |
202 |
Q |
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| T |
15727386 |
atgctccgactttatataaatacaagaagagattgcaaggtaaaactagcttgtatgaatgtaaaataaagagccaaaagagcacctattgtagaaagtc |
15727485 |
T |
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| Q |
203 |
ccacagcccaacatgttaaatagttatgaacaagcgaagctctg |
246 |
Q |
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| T |
15727486 |
ccacagcccaacttgttaaatagttatgaacaagcgaagctctg |
15727529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 15733453 - 15733548
Alignment:
| Q |
151 |
gcttgtatgaatgtaaaataaagagccaaaagagcacctattgtagaaagtcccacagcccaacatgttaaatagttatgaacaagcgaagctctg |
246 |
Q |
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| T |
15733453 |
gcttgtatgaatgtaaaataaagtgccaaaagagcacctaatgtagaaagtcccacagcccaacttgttaaatagttatgaacaagcgaagctctg |
15733548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 153
Target Start/End: Original strand, 15733079 - 15733198
Alignment:
| Q |
32 |
aatccaagggtgccatggaattcataaaacacttgattttccttctctgtgnnnnnnnnctataaatatatatgctccgactttatataaatacaagaag |
131 |
Q |
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| T |
15733079 |
aatccaagtgtagcatggaattcataaaacacttgattttccttctctatgaaaaaaaactataaatat--atgctccaactttaaataaatacaagaag |
15733176 |
T |
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| Q |
132 |
agattgcaaggtaaaactagct |
153 |
Q |
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| T |
15733177 |
agattgcaagggaaaactagct |
15733198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Original strand, 18056840 - 18056916
Alignment:
| Q |
151 |
gcttgtatgaatgtaaaataaagagccaaaagagcacctattgtagaaagtcccacagcccaacatgttaaatagtt |
227 |
Q |
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| T |
18056840 |
gcttgtatgaatgtaaagtaaagagccaaaaaagccccaaaggttgaaagtcccacagcccagctagttaaatagtt |
18056916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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