View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13759_low_5 (Length: 237)
Name: NF13759_low_5
Description: NF13759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13759_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 38529919 - 38530132
Alignment:
| Q |
10 |
catcatcagtatcagtatcaatatctaattctttatctgtatctgaatccatagcatcagattccgaatcaccgctctcttcagactcagtgccactctc |
109 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38529919 |
catcatcagtatcagtatcaatatctatttctttatctgtatctgaatacacagcatcagattccgaatcaccgctctcttcagactcagtgccactctc |
38530018 |
T |
|
| Q |
110 |
aacctccagtttcgctttcttaactttcaccaactcctcttcttcatcatcattgtcctcctcatcactactctgttctactttcttcttcttgtcatct |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38530019 |
aacctccagtttcgctttcttaactttcaccaactcctcttcttcatcatcattgtcctcctcatcactactctgttctactttcttcttcttatcatct |
38530118 |
T |
|
| Q |
210 |
tcttcgtccatttt |
223 |
Q |
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|||||||||||||| |
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| T |
38530119 |
tcttcgtccatttt |
38530132 |
T |
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