View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375R-Insertion-10 (Length: 350)
Name: NF1375R-Insertion-10
Description: NF1375R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375R-Insertion-10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 42789143 - 42789485
Alignment:
| Q |
8 |
agatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatct |
107 |
Q |
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| T |
42789143 |
agatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatct |
42789242 |
T |
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| Q |
108 |
tttgagagactataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactg |
207 |
Q |
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| T |
42789243 |
tttgagagactatagacaatgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactg |
42789342 |
T |
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| Q |
208 |
atcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
42789343 |
atcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgg |
42789442 |
T |
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| Q |
308 |
gtttgaagggtttgtgatcagcactccactcactttcatgttc |
350 |
Q |
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| T |
42789443 |
gtttgaagggtttgtgatcagcactccactcactttcatgttc |
42789485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 42798681 - 42799023
Alignment:
| Q |
8 |
agatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatct |
107 |
Q |
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| T |
42798681 |
agatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatct |
42798780 |
T |
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| Q |
108 |
tttgagagactataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactg |
207 |
Q |
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| T |
42798781 |
tttgagagactatagacaatgtgaactctctctgcatctttgtatcgacgagtttcaagaatctctgctatgcttacaaactcagaggaattaaacactg |
42798880 |
T |
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| Q |
208 |
atcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtttaactgttatacctaacgg |
307 |
Q |
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| T |
42798881 |
atcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatctcttctagaactgaacgtttaactgttatacctaatgg |
42798980 |
T |
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| Q |
308 |
gtttgaagggtttgtgatcagcactccactcactttcatgttc |
350 |
Q |
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| T |
42798981 |
gtttgaagggtttgtgatcagcactccactcactttcatgttc |
42799023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 34566816 - 34567096
Alignment:
| Q |
8 |
agatatcaaggtaaaactcgacattcttcgggctgttgttacaaccttatcattgtatgaataaattgttccaactctgaaacctggtagaccgagatct |
107 |
Q |
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|||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34566816 |
agatattaaggtaaaactcgacattcttcgtgctgttgtaacaactttatcgttgtaggaataaattgttccgactctgaaacctggtagaccgagatct |
34566915 |
T |
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| Q |
108 |
tttgagagactataaacaatgtgaactctctctgcatctttgtatcgacgagtttcgagaatctctgctatgcttacaaactcagaggaattaaacactg |
207 |
Q |
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|| || |||||||||||||||||| ||| || || ||||||||| |||||| ||| |||||||| |||||||||| || ||| ||| || |||| |
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| T |
34566916 |
ttagaaagactataaacaatgtgacatctttccgcgtctttgtattgacgagattcaagaatctcggctatgcttatgaattcatgtgaagagaaaactg |
34567015 |
T |
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| Q |
208 |
atcctgagtagatttcgtctgagataaggtggatgttcttttttgtcacaaagtcaagaatttcttctagaactgaacgtt |
288 |
Q |
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| || ||||||||||||||||||| |||||| |||||||| ||||| |||| ||||| || || ||||||||||||| |
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| T |
34567016 |
agcccgagtagatttcgtctgagacaaggtgtatgttcttgcgagtcacgaagttcagaatgtcctcgagaactgaacgtt |
34567096 |
T |
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