View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375R-Insertion-12 (Length: 362)
Name: NF1375R-Insertion-12
Description: NF1375R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375R-Insertion-12 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 51578514 - 51578867
Alignment:
| Q |
9 |
catcgtaccgctcattaagcaatctccgaaccatatataagcaaagcaagaaatcgaacttaaaagcaataggtcaattaatgggtgttcctagatctga |
108 |
Q |
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| T |
51578514 |
catcgtaccgctcattaagcaatctccgaaccatatataagcaaagcaagaaatcgaacttaaaagcaataggtcaattaatgggtgttcctagatctga |
51578613 |
T |
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| Q |
109 |
aattagaactgggtacaaagcatgtgtatttttaaaaactagaagagaaaaaatgttcgacaaacataacaaatgaaaataatcataagtaaaatgatta |
208 |
Q |
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| T |
51578614 |
aattagaaccgggtacaaagcatgtgtatttttaaaaactagaagagaaaaaatgttcgacaaacataacaaatgaaaataatcataagtaaaatgatta |
51578713 |
T |
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| Q |
209 |
aaatgagattttcgaaaaacttctttttactagtagttcacggggatccctaatatgcacccctaaaacaagggtccaccggtggacttatacaaatgac |
308 |
Q |
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| T |
51578714 |
aaatgagattttccaaaaacttctttttactagtagttcacggggatccctaatatgcacccctaaaacaagggtccaccggtggacttatacaaatgac |
51578813 |
T |
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| Q |
309 |
atatcacaatcggttgcccttaatttattgtgtaaatattaaataccaattttg |
362 |
Q |
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| T |
51578814 |
ataccacaatcggttgcccttaatttattgtgtaaatattaaataccaattttg |
51578867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 49356579 - 49356615
Alignment:
| Q |
256 |
ccctaatatgcacccctaaaacaagggtccaccggtg |
292 |
Q |
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| T |
49356579 |
ccctaatatggacccctaaaacaagggtccaccggtg |
49356615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 14350197 - 14350161
Alignment:
| Q |
256 |
ccctaatatgcacccctaaaacaagggtccaccggtg |
292 |
Q |
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| T |
14350197 |
ccctaatatggacccttaaaacaagggtccaccggtg |
14350161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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