View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375R-Insertion-13 (Length: 380)
Name: NF1375R-Insertion-13
Description: NF1375R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375R-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 45390948 - 45391131
Alignment:
| Q |
9 |
tccaaaaccttcaatggctccgctttctctcccttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacg |
108 |
Q |
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| T |
45390948 |
tccaaaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacg |
45391047 |
T |
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| Q |
109 |
accgacgaactttccgagcacagctttcacaatgcatgaatactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
192 |
Q |
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| T |
45391048 |
accgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
45391131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 45386579 - 45386745
Alignment:
| Q |
9 |
tccaaaaccttcaatggctccgctttctctcccttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacg |
108 |
Q |
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|||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45386579 |
tccaaaaccttcaatggctctgctttctctcctttcacaaccaccatatgagatttgcaatcagttatcacttcttcaacacctggaaaatctttcaatg |
45386678 |
T |
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| Q |
109 |
accgacgaactttccgagcacagctttcacaatgcatgaatactttcagcaaaatctctgccggagg |
175 |
Q |
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| T |
45386679 |
accgacgaactttccgagcacagccttcacaatgcatgaaaactctcagcaaaatctctgctggagg |
45386745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 45391199 - 45391231
Alignment:
| Q |
260 |
ctaaacaaaataaaattgctcagaatcagcgcc |
292 |
Q |
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| T |
45391199 |
ctaaacaaaataaaattgctcagaatcagcgcc |
45391231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 192
Target Start/End: Original strand, 734556 - 734739
Alignment:
| Q |
9 |
tccaaaaccttcaatggctccgctttctctcccttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatctttcaacg |
108 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
734556 |
tccaaaaccttcaatggctccgctttctctcctttcacaaccaccgtatgagacttgcaatcagctatcacttcttcaacacctggaaaatctttcaacg |
734655 |
T |
|
| Q |
109 |
accgacgaactttccgagcacagctttcacaatgcatgaatactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
192 |
Q |
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| T |
734656 |
accgacgaactttccgagcacagctttcacaatgcatgaaaactttcagcaaaatctctgccggaggtggcgcaggaacagcag |
734739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 734807 - 734839
Alignment:
| Q |
260 |
ctaaacaaaataaaattgctcagaatcagcgcc |
292 |
Q |
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| T |
734807 |
ctaaacaaaataaaattgctcagaatcagcgcc |
734839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 40578002 - 40578088
Alignment:
| Q |
14 |
aaccttcaatggctccgctttctctcccttcacaaccaccgtatgagacttgcaatcagttatcacttcttcaacacctggaaaatc |
100 |
Q |
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| T |
40578002 |
aaccttcaatggatccgctttttctcctttaacaataaccttgtgagatttgcaatcagtaaccacatcttcaacccctgaaaaatc |
40578088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 40578165 - 40578235
Alignment:
| Q |
89 |
acctggaaaatctttcaacgaccgacgaactttccgagcacagctttcacaatgcatgaatactttcagca |
159 |
Q |
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| T |
40578165 |
acctggaaaacctttgagtgaacgacgaactttacgagcacaaccttcacaatgcatgaagactttaagca |
40578235 |
T |
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