View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1375R-Insertion-14 (Length: 464)
Name: NF1375R-Insertion-14
Description: NF1375R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375R-Insertion-14 |
 | |
|
| [»] chr3 (23 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 10 - 464
Target Start/End: Complemental strand, 19558076 - 19557636
Alignment:
| Q |
10 |
taaggaccccaaaggtttttacctattaaaatataattgtaactaaaatatagtaagttgcaaaatagtaattcttcattgcttatgaactggtctgttt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19558076 |
taaggaccccaaaggtttttacctattaaaatattattgtaactaaaatatagtaagttgcaaaatagtaattcttcattgcttatgaactggtctgttt |
19557977 |
T |
|
| Q |
110 |
tacacat--acatgtcttata----tattatttaaaggaaaatgctcaatgatacaagacgaaaacacaccaaatgtgatttgtggctagcatctttttt |
203 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19557976 |
tacacatacacatgtcttatatatttattatttaaaggaaaatgctcaatgatacaagacgaaaacacaccaaatgtgatttgtggctagcatctttttt |
19557877 |
T |
|
| Q |
204 |
attggtccagcacactattatatgctctttcttactttattaatattgagcttggccacatactttcaagttctccacttattcttatacccatacttga |
303 |
Q |
| |
|
||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| | | | | | |
|
|
| T |
19557876 |
attggtccaccacactatta---------------ttttttaatattgagcttggccacatactttcaatttctccacttattcttctgctgagaatcac |
19557792 |
T |
|
| Q |
304 |
tatatatgcttcaaacatatataataaaaactttggaggaagatgtttcttatttaggttcatgccatctgtggttaaatatataaatataaatatttat |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| |
|
|
| T |
19557791 |
aatatatgcttcaaacatatataataaaaactttggaggaagatgtttcttattta-gttcatgccatatgtggttaaacat----atataaatatttat |
19557697 |
T |
|
| Q |
404 |
aatcatgtaatttatttcatttagcacaacaacaagtaagtggcggaaactcaatgcataa |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19557696 |
aatcatgtaatttatttcatttagcacaacaacaagtaagtggcggaaactcaatacataa |
19557636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 189 - 360
Target Start/End: Complemental strand, 19604474 - 19604299
Alignment:
| Q |
189 |
gctagcatctttttt-attggtccagcacactattatatgctctttcttactttatta-atattgagcttggccaca-tactttcaagttctccacttat |
285 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
19604474 |
gctagcatctttttttattggtccagcacactattatatgctctttcttactttctttcacattgagcttggccacactactttcaagttcttcacttat |
19604375 |
T |
|
| Q |
286 |
tcttatacccatacttgatatatatgcttcaaacatatat-aataaaaactttggaggaagatgtttcttatttag |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19604374 |
tcttatacccatacttgatatatatgcttcaaacatatataaataaaagctttggaggaagatgtttcttatttag |
19604299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 200 - 424
Target Start/End: Complemental strand, 19654291 - 19654066
Alignment:
| Q |
200 |
ttttattggtccagcacactattatatgctctttcttactttatta-atattgagcttggccaca-tactttcaagttctccacttattcttatacccat |
297 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| || | |||||||||||||||| |||||||||||||| ||||||||||||| ||||| |
|
|
| T |
19654291 |
ttttattggtccaacacactattatatgctctttcttgctttctttcacattgagcttggccacactactttcaagttcttcacttattcttatgcccat |
19654192 |
T |
|
| Q |
298 |
acttgatatatatgcttcaaacatatat-aataaaaactttggaggaagatgtttcttatttaggttcatgccatctgtggttaaatatataaatataaa |
396 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||| ||| | ||| | | ||||||| || ||||||| |
|
|
| T |
19654191 |
atttgatatatatgcttcaaacatatataaataaaagctttggagaaagatgtttcttattta-gttgatgacgtctttag-taaatatttatatataaa |
19654094 |
T |
|
| Q |
397 |
tatttataatcatgtaatttatttcatt |
424 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
19654093 |
tatttataataatgtaatttatttcatt |
19654066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 32150127 - 32150343
Alignment:
| Q |
10 |
taaggaccccaaaggtttttacctattaaaatataattgtaactaaaatatagtaa-gttgcaaaatagtaattcttcattgcttatgaactggtctgtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| || ||||| |||||||||||||| |||||||||| | |
|
|
| T |
32150127 |
taaggaccccaaaggtttttacctatttaaatattattgtaactaaaatatagtaatgttgtgaataagtaactcttcattgcttataaactggtctgat |
32150226 |
T |
|
| Q |
109 |
ttacacatacatgtcttatatattatttaaaggaaaatgctcaatgatacaagacgaaaacacaccaaatgtgatttgtggctagcatcttttttattgg |
208 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||| |
|
|
| T |
32150227 |
ttacacatacat---atgtatattatttaaaggaaaatgttcaatgatacaagaagaaaacacaccaaatctgatttgtggctagcaac-tttttattgg |
32150322 |
T |
|
| Q |
209 |
tccagcacactattatatgct |
229 |
Q |
| |
|
| || |||| |||| |||||| |
|
|
| T |
32150323 |
ttcaacacattattctatgct |
32150343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 248 - 359
Target Start/End: Complemental strand, 19594161 - 19594049
Alignment:
| Q |
248 |
attgagcttggccacatactttcaagttctccacttattcttatacccatacttgatatatatgcttcaaacatatat-aataaaaactttggaggaaga |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
19594161 |
attgagcttggccacatactttcaagttctccacttattcttatgccaatacttgatatatattcttcaaacatatataaataaaagctttggaggaaga |
19594062 |
T |
|
| Q |
347 |
tgtttcttattta |
359 |
Q |
| |
|
||||||||||||| |
|
|
| T |
19594061 |
tgtttcttattta |
19594049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 295 - 424
Target Start/End: Complemental strand, 19581865 - 19581734
Alignment:
| Q |
295 |
catacttgatatatatgcttcaaacatatataa-taaaaactttggaggaagatgtttcttatttaggttcatgccatctgtggttaaa--tatataaat |
391 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||| | |||||| |||||| || |
|
|
| T |
19581865 |
catacttgatatatatacttcaaacatatataaataaaagctttggaggaaaatgtttcttatttag-ttcatgccatctatagttaaacatatatagat |
19581767 |
T |
|
| Q |
392 |
ataaatatttataatcatgtaatttatttcatt |
424 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
19581766 |
ataaatatttataataatgtaatttatttcatt |
19581734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 19549963 - 19549852
Alignment:
| Q |
10 |
taaggaccccaaaggtttttacctattaaaatataattgtaactaaaatatagtaa-gttgcaaaatagt-aattcttcattgcttatgaactggtctgt |
107 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
19549963 |
taaggaccccaaaggtttttacctatttaaatattattgtaactaaaatatagtaatgttgcaaaatagtaaattcttcattgcttatgaactgatctgg |
19549864 |
T |
|
| Q |
108 |
tttacacataca |
119 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
19549863 |
tttacagataca |
19549852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 189 - 291
Target Start/End: Complemental strand, 19626726 - 19626622
Alignment:
| Q |
189 |
gctagcatctttttt-attggtccagcacactattatatgctctttcttactttatta-atattgagcttggccacatactttcaagttctccacttatt |
286 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19626726 |
gctagcatctttttttattggtccatcacactattatatgctctttcttgctttatttcacattgagcttggccacatactttcaagttctccacttatt |
19626627 |
T |
|
| Q |
287 |
cttat |
291 |
Q |
| |
|
||||| |
|
|
| T |
19626626 |
cttat |
19626622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 18478579 - 18478684
Alignment:
| Q |
17 |
cccaaaggtttttacctattaaaatataattgtaactaaaatata-----gtaa-gttgcaaaatagtaattcttcattgcttatgaactggtctgtttt |
110 |
Q |
| |
|
|||| ||||||||||||||| |||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
18478579 |
cccagaggtttttacctatttaaatattattgtaactaaaatataatatagtaatgttgcaaaatagtaattcttcattgcttatgaactgatctggttt |
18478678 |
T |
|
| Q |
111 |
acacat |
116 |
Q |
| |
|
|||||| |
|
|
| T |
18478679 |
acacat |
18478684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 19539868 - 19539755
Alignment:
| Q |
10 |
taaggaccccaaaggtttttacctattaaaatataattgtaactaaaatatag--taa-gttgcaaaatagtaa-ttcttcattgcttatgaactggtct |
105 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
19539868 |
taaggaccccaaaggttcttaccaatttaaatattattgtaactaaaatatataataatgttgcaaaatagtaaattcttcattgcttatgaactgatct |
19539769 |
T |
|
| Q |
106 |
gttttacacataca |
119 |
Q |
| |
|
| |||||| ||||| |
|
|
| T |
19539768 |
ggtttacagataca |
19539755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 299 - 370
Target Start/End: Original strand, 18478772 - 18478843
Alignment:
| Q |
299 |
cttgatatatatgcttcaaacatatat-aataaaaactttggaggaagatgtttcttatttaggttcatgcca |
370 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
18478772 |
cttgatatatatgcttcaaacatatataaataaaagctttggaggaaaatgtttcttattta-gttcatgcca |
18478843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 326 - 423
Target Start/End: Original strand, 18478873 - 18478967
Alignment:
| Q |
326 |
aataaaaactttggaggaagatgtttcttatttaggttcatgccatctgtggttaaatatataaatataaatatttataatcatgtaatttatttcat |
423 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| ||| ||||| ||| | || ||| |||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
18478873 |
aataaaagctttggaggaagatgtttcttattta-gttgatgccgtctttagtaaaaaatat--atataaatatttataataatgtaatttatttcat |
18478967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 19549792 - 19549730
Alignment:
| Q |
300 |
ttgatatatatgcttcaaa-catatataa-taaaaactttggaggaagatgtttcttatttag |
360 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
19549792 |
ttgatatatatgcttcaaaacatatataaataaaagctttggaggaagatgtttcttatttag |
19549730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 289
Target Start/End: Original strand, 18478702 - 18478745
Alignment:
| Q |
246 |
atattgagcttggccacatactttcaagttctccacttattctt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18478702 |
atattgagcttggccacatactttcaagttctccatttattctt |
18478745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 19581931 - 19581888
Alignment:
| Q |
246 |
atattgagcttggccacatactttcaagttctccacttattctt |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19581931 |
atattgagcttggccacatactttcaagttctccatttattctt |
19581888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 19582040 - 19581994
Alignment:
| Q |
126 |
atatattatttaaaggaaaatgctcaatgatacaagacgaaaacaca |
172 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19582040 |
atatattattaaaaggaaaatgctcattgatacaagacgaaaacaca |
19581994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 294
Target Start/End: Complemental strand, 19539702 - 19539654
Alignment:
| Q |
246 |
atattgagcttggccacatactttcaagttctccacttattcttatacc |
294 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
19539702 |
atattgagcttggccacataatttcaagttctccatttattcttctacc |
19539654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 438
Target Start/End: Complemental strand, 19604290 - 19604242
Alignment:
| Q |
390 |
atataaatatttataatcatgtaatttatttcatttagcacaacaacaa |
438 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
19604290 |
atataaatatttataataatgtaatttatttcattacgtacaacaacaa |
19604242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 19582154 - 19582076
Alignment:
| Q |
21 |
aaggtttttacctattaaaatataattgtaactaaaatatagtaa-gttgcaaaatagtaattcttcattgcttatgaactg |
101 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| |||| | ||||||||||| ||| ||||||||| |||| ||||| |
|
|
| T |
19582154 |
aaggtttttacctatttaaatat---tgtaactaaaatgtagtgatgttgcaaaataataactcttcattggttatcaactg |
19582076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 424
Target Start/End: Complemental strand, 19549721 - 19549687
Alignment:
| Q |
390 |
atataaatatttataatcatgtaatttatttcatt |
424 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19549721 |
atataaatatttataataatgtaatttatttcatt |
19549687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 19617938 - 19617904
Alignment:
| Q |
326 |
aataaaaactttggaggaagatgtttcttatttag |
360 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19617938 |
aataaaagctttggaggaagatgtttcttatttag |
19617904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 334 - 424
Target Start/End: Complemental strand, 19539609 - 19539524
Alignment:
| Q |
334 |
ctttggaggaagatgtttcttatttaggttcatgccatctgtggttaaatatataaatataaatatttataatcatgtaatttatttcatt |
424 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||| ||| | || ||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
19539609 |
ctttggagagagatgtttcttatttag-ttgatgctgtctttagtaaaatatata----taaatatttataataatgtaatttatttcatt |
19539524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 423
Target Start/End: Complemental strand, 19626609 - 19626576
Alignment:
| Q |
390 |
atataaatatttataatcatgtaatttatttcat |
423 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
19626609 |
atataaatatttataataatgtaatttatttcat |
19626576 |
T |
|
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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 360
Target Start/End: Complemental strand, 18025745 - 18025652
Alignment:
| Q |
264 |
tactttcaagttctccacttattct-tatacccatacttgatatatatgcttcaaacatatataataaaaactttggaggaagatgtttcttatttag |
360 |
Q |
| |
|
|||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
18025745 |
tactttcaagttctccacttatgctctgaatacatacttgatatatatgcttcaaacatatataaata----tttggaggaagatgtttcttatttag |
18025652 |
T |
|
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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 18025849 - 18025802
Alignment:
| Q |
72 |
aaatagtaattcttcattgcttatgaactggtctgttttacacataca |
119 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||| |||||||||||| |
|
|
| T |
18025849 |
aaatagtaactcttcattgcttctaaactggtctgatttacacataca |
18025802 |
T |
|
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