View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375R-Insertion-19 (Length: 930)
Name: NF1375R-Insertion-19
Description: NF1375R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375R-Insertion-19 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 392 - 856
Target Start/End: Original strand, 43069050 - 43069508
Alignment:
| Q |
392 |
gtgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatcttttggttctttagctagagtgcagagtgtagaagatctttctaagaa |
491 |
Q |
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| T |
43069050 |
gtgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatcttttggttctttagctagagtgcagagtgtagaagatctttctaagaa |
43069149 |
T |
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| Q |
492 |
attagagagaccaaattacagaaacaaaaagaaatcatgcaaaagctttggccggtacttgtgcactccaaaggcaacaatatcnnnnnnnnncttcaag |
591 |
Q |
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| T |
43069150 |
attagagagaccaaattacagaaacaaaaagaaatcatgcaaaagctttggccggtacttgtgcactccaaaggcaacaatatcaaaaaaaagcttcaag |
43069249 |
T |
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| Q |
592 |
aggagcttgtataataactagaagagggagtttccttggagggtctagatcttcctttgccgtacnnnnnnncttttgaaattcaatcttgtaagagctt |
691 |
Q |
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| T |
43069250 |
aggagcttgtataataactagaagagggagtttccttggagggtctagatcttcctttgccgtacaaaaaaacttttgaaattcaatcttgtaagagctt |
43069349 |
T |
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| Q |
692 |
tttgtttcatttcatgcac-aaaatattgaggaaaattttgaatcgctcatannnnnnngatgagatgaaatcttcttaattattatattactttattct |
790 |
Q |
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| T |
43069350 |
tttgtttcatttcatgcacaaaaatattgaggaaaattttgaatcgctcata-ttttttgatgaaatgaaatcttcttaattattatattac-ttattct |
43069447 |
T |
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| Q |
791 |
acacgtagatgattgatcacgatggagtgtctcctcactcttatgttttccacatgggtgataggg |
856 |
Q |
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| T |
43069448 |
acacgtagatgattgatca----tgagtgtctcctcactcttatgttttccatat-ggtgataggg |
43069508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 43068641 - 43068970
Alignment:
| Q |
8 |
aggtgacaaagggcaaaacaaatatttctagaaatgaatgtgaagggaatcaaagatggtaacagtaacaaaaattggattgttaagcaagatgtggatg |
107 |
Q |
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| T |
43068641 |
aggtgacaaagggcaaaacaaatatttctagaaatgaatgtgaagggaatcaaagatggtaacagtaacaaaaattggattgttaagcaagatgtggatg |
43068740 |
T |
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| Q |
108 |
atgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatgaattctatgtgttcatcttcttcatcagagttagatgatgatcaaga |
207 |
Q |
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| T |
43068741 |
atgatgatgtaactgattcaatttcgaatggatctattacagaagattcaatgaattctatgtgttcatcttcttcatcagagttagatgatgatcaaga |
43068840 |
T |
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| Q |
208 |
agtatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatggtcccttatatgaactatcagaacttatgaaccatctccctttgaag |
307 |
Q |
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| T |
43068841 |
agcatcctcttcaacttctagtttgtcatcttcatcatcatcacattcaaatggtcccttatatgaactatcagaacttatgaaccatctccctttgaag |
43068940 |
T |
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| Q |
308 |
taagca----atatttctcatgcatgatgc |
333 |
Q |
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| T |
43068941 |
taagcaatatatatttctcatgcatgatgc |
43068970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 34038268 - 34038218
Alignment:
| Q |
393 |
tgacatttgcaggagaggattgtctatgttttatcaagggaaggcacaatc |
443 |
Q |
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|||| ||||||||||||| ||||| |||||||||||||||||||| ||||| |
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| T |
34038268 |
tgacttttgcaggagagggttgtcaatgttttatcaagggaaggctcaatc |
34038218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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