View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1375R-Insertion-7 (Length: 247)
Name: NF1375R-Insertion-7
Description: NF1375R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375R-Insertion-7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 41873321 - 41873458
Alignment:
| Q |
9 |
ctatatacgtttttggaatatatatggttatatactagttggagtcaaattcacttatttgatgttcttcggtcccataatataaattatttagcaagta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41873321 |
ctatatacgtttttggaatatatatggtta----ctagttggagtcaaattcacttatttgatgttcttcggtcccataatataaatgatttagcaagta |
41873416 |
T |
|
| Q |
109 |
aattgttttttgacatgtagtatatcgttttgtagtatcaat |
150 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41873417 |
aattgttttttgacatgtagtatgtcgttttgtagtatcaat |
41873458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 41873716 - 41873796
Alignment:
| Q |
158 |
gatagaatcactaactcaagttatttaataag-attcagatgaaatttcatttaaaaataaaataatactattttgttctt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41873716 |
gatagaatcactaactcaagttatttaataaggattcgcatgaaatttcatttaaaaataaaataatactattttgttctt |
41873796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University