View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375R-Insertion-9 (Length: 325)
Name: NF1375R-Insertion-9
Description: NF1375R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375R-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 125 - 322
Target Start/End: Complemental strand, 49254965 - 49254768
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaactatcatcattgaaataatttgtagaa |
224 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
|
| Q |
225 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaacca |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49254865 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaacca |
49254768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 95 - 275
Target Start/End: Original strand, 49274577 - 49274761
Alignment:
| Q |
95 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaa |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
49274577 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaa |
49274676 |
T |
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| Q |
191 |
tgaccaactatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
275 |
Q |
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| T |
49274677 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 125 - 324
Target Start/End: Complemental strand, 49267227 - 49267028
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaactatcatcattgaaataatttgtagaa |
224 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| ||||||| || |||||||||||||||||||||| |
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| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
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| Q |
225 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccacc |
324 |
Q |
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|||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
49267127 |
aatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcacc |
49267028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 125 - 311
Target Start/End: Complemental strand, 49271633 - 49271447
Alignment:
| Q |
125 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaactatcatcattgaaataatttgtagaa |
224 |
Q |
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||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
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| Q |
225 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
311 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
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| T |
49271533 |
aatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 49256012 - 49255932
Alignment:
| Q |
8 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgactaccactcaaagctgaaatgat |
88 |
Q |
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| T |
49256012 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatgat |
49255932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 49268982 - 49268906
Alignment:
| Q |
8 |
aagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgactaccactcaaagctgaaa |
84 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||| ||||||||| ||||||| |
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| T |
49268982 |
aagtttcaagctgtggatttggtagaagaccagaaagaaggattaggagttcaaatgaccaccactcaaggctgaaa |
49268906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 49273738 - 49273704
Alignment:
| Q |
51 |
taggagctcaaatgactaccactcaaagctgaaat |
85 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
49273738 |
taggagctcaaatgaccaccactcaaagctgaaat |
49273704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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