View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375_high_19 (Length: 236)
Name: NF1375_high_19
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 515711 - 515566
Alignment:
| Q |
29 |
gctgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgcttctccttcttcttcctccattactcacacac |
128 |
Q |
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| T |
515711 |
gctgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacctagaaaacgcttctccttcttcttcctccattactcacacac |
515612 |
T |
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| Q |
129 |
actcttttctacaaagctttcgtcctttcactccttgtattgtctc |
174 |
Q |
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| T |
515611 |
actcttttctacaaagttttcgtcctttcactctttgtattgtctc |
515566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 560625 - 560701
Alignment:
| Q |
29 |
gctgccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgcttctccttc |
105 |
Q |
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| T |
560625 |
gctgccgtccaaataccaaagttgcattccagagtttactattttccacaaggccacttagaacatgcttcttcttc |
560701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 8823054 - 8823119
Alignment:
| Q |
33 |
ccgtcaaaattccaaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgctt |
98 |
Q |
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| T |
8823054 |
ccgtcaaaattcctaaacttcattcaaaggtttactatttcccgcaaggtcacttagaacatgctt |
8823119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 105
Target Start/End: Original strand, 20229263 - 20229322
Alignment:
| Q |
46 |
aaagttgcattcaagggtttattatttcccacaaggtcacttagaaaatgcttctccttc |
105 |
Q |
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| T |
20229263 |
aaagttgcattcaagagtttactattttccacaaggccacttagaatatgcttcttcttc |
20229322 |
T |
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