View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1375_high_20 (Length: 228)
Name: NF1375_high_20
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_high_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 2470966 - 2471186
Alignment:
| Q |
1 |
tcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2470966 |
tcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacat |
2471065 |
T |
|
| Q |
101 |
tcattacttgcaattatgacccacctggtaacattgctggtcaattaccgtactaagtgactcagatcaatatttttatgcagtagtatata-ttttata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2471066 |
tcattacttgcaattatgacccacctggtaacattgctggtcaattaccgtactaagtgactcagatcaatatttttatgcagtagtatatatttttata |
2471165 |
T |
|
| Q |
200 |
agtcacttccctatattattc |
220 |
Q |
| |
|
||| |||||||| | |||||| |
|
|
| T |
2471166 |
agtgacttccctctcttattc |
2471186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 2486511 - 2486656
Alignment:
| Q |
25 |
cattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccac |
124 |
Q |
| |
|
|||||||| ||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||||||| || | |
|
|
| T |
2486511 |
cattatactcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataatggtggctcatttgttacttgcaattatgatcccc |
2486610 |
T |
|
| Q |
125 |
ctggtaacattgctggtcaattaccgtactaagtgactcagatcaa |
170 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||| ||||| |
|
|
| T |
2486611 |
ctggtaacattgctggccaattaccatactaagtgattcatatcaa |
2486656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 2474213 - 2474340
Alignment:
| Q |
1 |
tcatgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacat |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||||| |||||| | ||| ||| || ||||| ||||||||| |||||||| ||||||||||||||| |||| |
|
|
| T |
2474213 |
tcatgtgttggtggtgaatgcctccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacat |
2474312 |
T |
|
| Q |
101 |
tcattacttgcaattatgacccacctgg |
128 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |
|
|
| T |
2474313 |
tcattacttgcaattacgacccccctgg |
2474340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 2462593 - 2462696
Alignment:
| Q |
25 |
cattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacc |
121 |
Q |
| |
|
|||||||||||||| | ||| ||| ||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||| |
|
|
| T |
2462593 |
cattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacc |
2462692 |
T |
|
| Q |
122 |
cacc |
125 |
Q |
| |
|
|||| |
|
|
| T |
2462693 |
cacc |
2462696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 2466641 - 2466744
Alignment:
| Q |
25 |
cattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacc |
121 |
Q |
| |
|
|||||||||||||| | ||| ||| ||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||| |
|
|
| T |
2466641 |
cattatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacc |
2466740 |
T |
|
| Q |
122 |
cacc |
125 |
Q |
| |
|
|||| |
|
|
| T |
2466741 |
cacc |
2466744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 2478804 - 2478954
Alignment:
| Q |
3 |
atgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattc |
102 |
Q |
| |
|
|||| ||| ||||||||||| ||||| ||||||||| | ||| | |||| |||| |||||||||||||||||| |||| ||||||| || ||||| |
|
|
| T |
2478804 |
atgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacattt |
2478903 |
T |
|
| Q |
103 |
attacttgcaattatgacccacctggtaacattgctggtcaattaccgtac |
153 |
Q |
| |
|
||||||| |||||| | || || ||||||||| |||| |||||||||||| |
|
|
| T |
2478904 |
gttacttgtaattattatcccccaggtaacattcctggccaattaccgtac |
2478954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 3063377 - 3063301
Alignment:
| Q |
52 |
tcacaacgtgttggatgtggcaaagtgagatgtga---taatggaggcacattcattacttgcaattatgacccacc |
125 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| |||| ||||||||||| |||||||| |||||||| |
|
|
| T |
3063377 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
3063301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 125
Target Start/End: Original strand, 2469994 - 2470066
Alignment:
| Q |
53 |
cacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc |
125 |
Q |
| |
|
||||||| ||||||||| |||||||| |||| |||| ||||| |||||||||||||||||||| |||||||| |
|
|
| T |
2469994 |
cacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccacc |
2470066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 2458054 - 2458117
Alignment:
| Q |
62 |
ttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc |
125 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
2458054 |
ttggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacc |
2458117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 2483308 - 2483458
Alignment:
| Q |
3 |
atgtgttggtggtgaatgtcttcattatacccaggtgatatgggaaaaatcacaacgtgttggatgtggcaaagtgagatgtgataatggaggcacattc |
102 |
Q |
| |
|
|||| ||| ||||||||||| ||||| ||||||||| | ||| | |||| |||| |||||||||||||||||| |||| ||||||| || ||||| |
|
|
| T |
2483308 |
atgttttgatggtgaatgtcatcattttacccaggttgtttggtcaggttcactacgtcttggatgtggcaaagtgaaatgtaataatggtggaacattt |
2483407 |
T |
|
| Q |
103 |
attacttgcaattatgacccacctggtaacattgctggtcaattaccgtac |
153 |
Q |
| |
|
||||||| |||||| | || || ||||| ||| |||| |||||||||||| |
|
|
| T |
2483408 |
gttacttgtaattattatcccccaggtaatattcctggccaattaccgtac |
2483458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 18015943 - 18016019
Alignment:
| Q |
52 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
125 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
|
|
| T |
18015943 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
18016019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University