View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1375_low_1 (Length: 811)
Name: NF1375_low_1
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 230 - 783
Target Start/End: Original strand, 2649851 - 2650404
Alignment:
| Q |
230 |
ctctctctgtttttaataagtcatcatattaatctcttaaatttacaaaatatcatatactattttatgatgaatctacataccgaatcaacatttcaga |
329 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2649851 |
ctctctctttttttaacaagtcatcatattaatctcttaaatttacaaaatatcatataatattttatgatgaatctacataccgaaccaacatttcaga |
2649950 |
T |
|
| Q |
330 |
ttaaagacttgtccggtgtttatgtgacacattgaaacatgtgattacattcaattactcattggccagtattagtgccatattcagtgtaagtatcatg |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| |||||||||||||| |
|
|
| T |
2649951 |
ttaaagacttgtccggtgtttatgtgacacattgaaacatgtacttacattcaattactcattggcaagtattagtgtcatattcggtgtaagtatcatg |
2650050 |
T |
|
| Q |
430 |
attcatnnnnnnnnnnnnnnnnnnnnntgaagttacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattcc |
529 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2650051 |
actcataaaaaagtaaagaaaagaaaatgaagttacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattcc |
2650150 |
T |
|
| Q |
530 |
ttgaataccaacagaggcacatttagagggtgacctattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagca |
629 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2650151 |
ttgaataccaacagaggcacatttagagggtgacctattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagca |
2650250 |
T |
|
| Q |
630 |
atcccagctctataaaatgaccatgacttcaactctcctggctcaaacaaaggtgctggtggtgcttccttgtagtccttactatcactctgagctcctg |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
2650251 |
atcccagctctataaaatgaccatgacttcaactctcctggctcaaacaaaggtgctggtggtgcttctttgtagtccttactatcactctgagctcctg |
2650350 |
T |
|
| Q |
730 |
tgcccaatgcattcttttctgagaacttgtttgctccaaccttaacatcttctt |
783 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2650351 |
tgcccaatgcattcttttctgagaatttgtttgctccaaccttaacatcttctt |
2650404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 2649595 - 2649831
Alignment:
| Q |
7 |
gcaccacagatagctccaagacactgcattattatgtagaatactgctcttgtcaaggacaacttcctagccaaaaacagaccgaatgtcactgctggat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2649595 |
gcaccacagatagctccaagacactgcattattatgtagaatactgctcttgtcaaggacagcttcctagccaaaaacagaccgaatgtcactgctggat |
2649694 |
T |
|
| Q |
107 |
ttatgtgcccacctgttcccaaccatctcgttagttttgttctaagcaaaataatttatagtgcatcaccatcttgaaattgtggagtccctaatttagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2649695 |
ttatgtgcccacctgttcccaaccatctcgttagttttgttctaagcaaaataatttatagtgcatcaccatcttgaaattgtggagtccctaatttagt |
2649794 |
T |
|
| Q |
207 |
agaccctcacatcatattaatccctctctctgttttt |
243 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2649795 |
agaccctcacatcatattaatctctctctctgttttt |
2649831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 463 - 693
Target Start/End: Original strand, 35230845 - 35231075
Alignment:
| Q |
463 |
tacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattccttgaataccaacagaggcacatttagagggtga |
562 |
Q |
| |
|
||||||| ||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||| | |
|
|
| T |
35230845 |
tacctgagattccagcagtacagtaaacaagagcaaagatcatgccaccaaaagcccaagcaattccttgaatacccacagtcttacacttagaatcagc |
35230944 |
T |
|
| Q |
563 |
cctattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagcaatcccagctctataaaatgaccatgacttcaac |
662 |
Q |
| |
|
||| |||||||| |||||||| |||||||| ||||| || | |||||| ||||| || ||||| ||||||||||| || || |||||||| | | |
|
|
| T |
35230945 |
tctaacaacacccataacagtcaaaacagtgatataaagaaaaaggaaagtagcaacgaactcagctatcccagctctgtagaaagaccatgaagtgagt |
35231044 |
T |
|
| Q |
663 |
tctcctggctcaaacaaaggtgctggtggtg |
693 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
35231045 |
tcagatggctcaaacaaaggtgctggtggtg |
35231075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 35230305 - 35230421
Alignment:
| Q |
5 |
cagcaccacagatagctccaagacactgcattattatgtagaatactgctcttgtcaaggacaacttcctagccaaaaacagaccgaatgtcactgctgg |
104 |
Q |
| |
|
|||||||||| ||||| || | ||| ||||| | |||||||| | |||||||||||| ||||| ||||| |||||||| || || ||||| |||||||| |
|
|
| T |
35230305 |
cagcaccacaaatagcacccaaacattgcatcaccatgtagaacaatgctcttgtcaatgacaatttccttgccaaaaatagcccaaatgtgactgctgg |
35230404 |
T |
|
| Q |
105 |
atttatgtgcccacctg |
121 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
35230405 |
atttatgtgaccacctg |
35230421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 462 - 781
Target Start/End: Complemental strand, 41037035 - 41036716
Alignment:
| Q |
462 |
ttacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattccttgaataccaacagaggcacatttagagggtg |
561 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||||||||||| ||||||| ||||||||| |||||||| |||||||||| |||||| |||| || |
|
|
| T |
41037035 |
ttacctgatattccagcagtgcagtagacaagggcaaagatcatacccccaaaagaccaagcaataccttgaatgccaacagaggaacatttggaggttg |
41036936 |
T |
|
| Q |
562 |
acctattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagcaatcccagctctataaaatgaccatgacttcaa |
661 |
Q |
| |
|
| || || |||||||| |||||||| | ||||||||||||||||||||||| || || || |||||||| |||||||| ||||| ||||||||||| | |
|
|
| T |
41036935 |
atctgttgacacccatgacagtcaaaatggtgatgtaaaggaacaagaaagtggctacgaactcagcaattccagctctgtaaaaagaccatgacttgag |
41036836 |
T |
|
| Q |
662 |
ctctcctggctcaaacaaaggtgctggtggtgcttccttgtagtccttactatcactctgagctcctgtgcccaatgcattcttttctgagaacttgttt |
761 |
Q |
| |
|
||| || ||||||||||| || |||||||||| || |||||||| || || ||||| |||||| |||| || |||| | | | |||||||| |||||| |
|
|
| T |
41036835 |
ctcaccaggctcaaacaatggagctggtggtggctctttgtagtctttgctgtcactttgagctgctgtccctaatggctgcctctctgagaatttgttt |
41036736 |
T |
|
| Q |
762 |
gctccaaccttaacatcttc |
781 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
41036735 |
gctccaaccttcacatcttc |
41036716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 489 - 709
Target Start/End: Original strand, 31460772 - 31460992
Alignment:
| Q |
489 |
acaagagcaaagatcataccaccaaaagcccaagcaattccttgaataccaacagaggcacatttagagggtgacctattcacacccatcacagtcaaga |
588 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||| ||||| || |||||||| |||||||||| |
|
|
| T |
31460772 |
acaagagcaaagatcatgccaccaaaagaccaagcaattccttgaataccaacagttttacacttagactcagacctgttaacacccataacagtcaaga |
31460871 |
T |
|
| Q |
589 |
cagtgatgtaaaggaacaagaaagttgcaacaaattcagcaatcccagctctataaaatgaccatgacttcaactctcctggctcaaacaaaggtgctgg |
688 |
Q |
| |
|
||||||||| | ||||| ||||| || ||||| ||||| ||||||||||| || || |||||||| | | || ||||||||||| |||||||| |
|
|
| T |
31460872 |
tagtgatgtacaagaacagaaaagtggctacaaactcagctatcccagctctgtagaaagaccatgaagtgagttcagaaggctcaaacaatggtgctgg |
31460971 |
T |
|
| Q |
689 |
tggtgcttccttgtagtcctt |
709 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
31460972 |
tggtggttccttgtagtcctt |
31460992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 113
Target Start/End: Original strand, 31460014 - 31460122
Alignment:
| Q |
5 |
cagcaccacagatagctccaagacactgcattattatgtagaatactgctcttgtcaaggacaacttcctagccaaaaacagaccgaatgtcactgctgg |
104 |
Q |
| |
|
|||||||||||||||| ||||| ||||| | |||||||| || || || ||||| ||||| ||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
31460014 |
cagcaccacagatagcaccaagggtttgcataaccatgtagaacacagccctggtcaatgacaatttccttgccaagaacaaaccgaatgtcactgctgg |
31460113 |
T |
|
| Q |
105 |
atttatgtg |
113 |
Q |
| |
|
|||||||| |
|
|
| T |
31460114 |
gtttatgtg |
31460122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 462 - 655
Target Start/End: Original strand, 4483448 - 4483641
Alignment:
| Q |
462 |
ttacctgaaattccagcagtgcaatagacaagagcaaagatcataccaccaaaagcccaagcaattccttgaataccaacagaggcacatttagagggtg |
561 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| |||| |||||| |||| |||||| | |
|
|
| T |
4483448 |
ttacctgagataccagcagtacaataaacaagagcaaaaatcattccaccaaaagcccaagcaattccctgaacaccaactgaggagcatttattactgg |
4483547 |
T |
|
| Q |
562 |
acctattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagcaatcccagctctataaaatgaccatga |
655 |
Q |
| |
|
| ||||||||||||||||||| || || || || ||||| ||||| || || || ||||| ||||||||||| || ||||| || |||||||| |
|
|
| T |
4483548 |
atttattcacacccatcacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatga |
4483641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 42796023 - 42795960
Alignment:
| Q |
464 |
acctgaaattccagcagtgcaatagacaagagcaaagatcatacc-accaaaagcccaagcaat |
526 |
Q |
| |
|
||||||||||||||||||||| || ||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
42796023 |
acctgaaattccagcagtgcagtaaacaaggacaaagatcatgccaaccaaaagcccaagcaat |
42795960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 529
Target Start/End: Original strand, 40208068 - 40208099
Alignment:
| Q |
498 |
aagatcataccaccaaaagcccaagcaattcc |
529 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
40208068 |
aagatcataccaccaaaagcccaagcaattcc |
40208099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University