View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375_low_11 (Length: 414)
Name: NF1375_low_11
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_11 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 189 - 414
Target Start/End: Original strand, 5474291 - 5474530
Alignment:
| Q |
189 |
ttcactgtggctactgtgaggggcagctttttaaactgatcaaataatatatttagtgcattattttttacagcataaatggaaagtctattagtttaga |
288 |
Q |
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| T |
5474291 |
ttcactgttgctgctgtgaggggcaacttttcaaacggaccaaacaatatattcagtgcattattttttactgaatacatggaaagtctattagtttaaa |
5474390 |
T |
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| Q |
289 |
tcaattttagatcaagagttctctaaggaaaaaagaatgaaaaacatcat--------------agagacaccgattaattatta-ttacaataaaacaa |
373 |
Q |
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| T |
5474391 |
tcaattttagattaagagttctctaaggaaaaaacaatg-aaaacatcattgaggagaactaagagagataccaattaattattatttacagtataacaa |
5474489 |
T |
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| Q |
374 |
gaactaatccctggcaattgtttcaccaccatagaatccgt |
414 |
Q |
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| T |
5474490 |
gaactaatacctgacaattgtttccccaccatagattccgt |
5474530 |
T |
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Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 5474133 - 5474231
Alignment:
| Q |
80 |
tgtatgataatttaatcaaaattggtgacattgtataatcaaaattgaaaaatcaaaccatagaaatgaatcaaatgaacaattgcaaagtcattctcc |
178 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5474133 |
tgtatgataatttaatcaaaattggcgacattgtataatcaaaattgaaggatcaaaccatagaaatgaatcaaatgaacaattacaaagtcattctcc |
5474231 |
T |
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