View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1375_low_12 (Length: 408)

Name: NF1375_low_12
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1375_low_12
NF1375_low_12
[»] chr3 (4 HSPs)
chr3 (12-311)||(28689864-28690164)
chr3 (12-209)||(51926013-51926205)
chr3 (69-142)||(2394819-2394891)
chr3 (69-130)||(45163166-45163226)
[»] chr2 (7 HSPs)
chr2 (23-108)||(28775081-28775166)
chr2 (27-142)||(20262899-20263013)
chr2 (66-156)||(2062051-2062140)
chr2 (87-133)||(27738984-27739030)
chr2 (152-211)||(28778034-28778096)
chr2 (73-133)||(29829775-29829835)
chr2 (64-136)||(42236673-42236745)
[»] chr1 (3 HSPs)
chr1 (27-142)||(24886443-24886557)
chr1 (69-131)||(24450634-24450695)
chr1 (84-142)||(46694043-46694101)
[»] chr8 (2 HSPs)
chr8 (71-152)||(26129924-26130004)
chr8 (84-131)||(37987711-37987758)
[»] chr7 (1 HSPs)
chr7 (89-133)||(2569353-2569397)
[»] chr4 (1 HSPs)
chr4 (62-142)||(26070602-26070682)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 311
Target Start/End: Complemental strand, 28690164 - 28689864
Alignment:
Q  12 atgaacaagcgacggacacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcga 111  Q
    ||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28690164 atgaacaagcgacagacacagtccaccaacggcacaaccgatgacagatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcga 28690065  T
Q  112 ctacgcaccaaactctttcgagtaatatctgtcaaatcaaaatcaaatccacacagataaacataactttttgtaacc-tatcctaaatcaagaaaatcc 210  Q
    |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  28690064 ctacgcaccaaactcttttgagcaatatctgtcgaatcaaaatcaaatccacacagataaacataactttttgtaaccagatcctaaatcaagaaaatcc 28689965  T
Q  211 aattttatttacttcaatcaggggaggacccagacattcaatttgagtgtggttaaaatatcaaatgaactataatgcaaattaaaatactacatattaa 310  Q
    |  |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||    
T  28689964 agatttatttacttcaatcaggggaggacccagacattcgatttgggtgtggttagaatatcaaatgaactatgatgcaaattaaaatactatatattaa 28689865  T
Q  311 c 311  Q
    |    
T  28689864 c 28689864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 51926013 - 51926205
Alignment:
Q  12 atgaacaagcgacggacacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcga 111  Q
    |||| ||||| |||||||| |||||||||| ||||||| ||||||| |||||||  ||||  ||||||| |||||||||||||||| ||| |||||||||    
T  51926013 atgagcaagcaacggacactgtccaccaacagcacaactgatgacggatgaaacggttctataggtacggttaacgactactaccgtcaacacggagcga 51926112  T
Q  112 ctacgcaccaaactctttcgagtaatatctgtcaaatcaaaatcaaatccacacagataaacataactttttgtaacc-tatcctaaatcaagaaaatc 209  Q
    | ||||||| |||||||||||| |||| | |||       ||||||||||||||||||||| | ||||||||||||||  |||||||||||||| ||||    
T  51926113 cgacgcacctaactctttcgagcaatacccgtc------gaatcaaatccacacagataaatagaactttttgtaaccagatcctaaatcaagataatc 51926205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 2394819 - 2394891
Alignment:
Q  69 tctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctg 142  Q
    ||||||||||| || || ||||||||||||||| |||||||| ||| ||||||||| |||||||| | ||||||    
T  2394819 tctgaaggtac-atgaatgactactaccgccaacacggagcgtctaagcaccaaaccctttcgagcattatctg 2394891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 45163226 - 45163166
Alignment:
Q  69 tctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttc 130  Q
    ||||||||||| || || ||||||||||||||| |||||||| ||| |||||||||||||||    
T  45163226 tctgaaggtac-atgaatgactactaccgccaacacggagcgtctaagcaccaaactctttc 45163166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 28775081 - 28775166
Alignment:
Q  23 acggacacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggag 108  Q
    ||||||||||||||||||||||||||||||| ||  |||||||| |||||||||||||||||| ||||||||||||||| ||||||    
T  28775081 acggacacagtccaccaacggcacaaccgataactgatgaaacagttctgaaggtacgattaatgactactaccgccaacacggag 28775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 20262899 - 20263013
Alignment:
Q  27 acacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactc 126  Q
    ||||| |||||| |||||||||||| |||| ||| | ||| |||| ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  20262899 acacaatccacctacggcacaaccg-tgacaaataatacagttctaaaggtacgattgaagactactaccgccaacacggagcgactacgcaccaaactc 20262997  T
Q  127 tttcgagtaatatctg 142  Q
    ||||||| || |||||    
T  20262998 tttcgagcaacatctg 20263013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 2062140 - 2062051
Alignment:
Q  66 aattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctgtcaaatcaaaatca 156  Q
    |||||||||||||| || || ||||||||||||||| |||||||| ||| ||||| |||||||||||| || ||||| ||| |||| ||||    
T  2062140 aattctgaaggtac-ataaatgactactaccgccaacacggagcgtctaagcacccaactctttcgagcaacatctgacaactcaagatca 2062051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 27739030 - 27738984
Alignment:
Q  87 gactactaccgccaatacggagcgactacgcaccaaactctttcgag 133  Q
    ||||||||||||||| |||||||| | | ||||||||||||||||||    
T  27739030 gactactaccgccaacacggagcgtcaatgcaccaaactctttcgag 27738984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 28778034 - 28778096
Alignment:
Q  152 aatcaaatccacacagat-aaacataacttttt-gtaacct-atcctaaatcaagaaaatcca 211  Q
    |||||||||||||||||| ||||| |||||||| ||||||  |||||||||||||||||||||    
T  28778034 aatcaaatccacacagatgaaacagaacttttttgtaaccagatcctaaatcaagaaaatcca 28778096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 29829835 - 29829775
Alignment:
Q  73 aaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgag 133  Q
    |||||||||| ||| || ||||||| ||| | |||||| ||||||||||||| ||||||||    
T  29829835 aaggtacgataaacaacaactaccgtcaacatggagcgtctacgcaccaaaccctttcgag 29829775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 42236673 - 42236745
Alignment:
Q  64 acaattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaa 136  Q
    |||||||| |||||||||  |||||| ||||||| ||| | |||||  ||||||||| | |||||||||||||    
T  42236673 acaattcttaaggtacgacgaacgacgactaccgtcaacatggagcatctacgcacctagctctttcgagtaa 42236745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 24886557 - 24886443
Alignment:
Q  27 acacagtccaccaacggcacaaccgatgacgaatgaaacaattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactc 126  Q
    ||||| |||||| |||||||||||| ||||| ||   ||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  24886557 acacaatccacctacggcacaaccg-tgacggatattacagttctgaaggtacgattgaagactactaccgccaacacggagcgactacgcaccaaactc 24886459  T
Q  127 tttcgagtaatatctg 142  Q
    ||||||| || |||||    
T  24886458 tttcgagcaacatctg 24886443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 131
Target Start/End: Original strand, 24450634 - 24450695
Alignment:
Q  69 tctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcg 131  Q
    ||||||||||| || || ||||||||||||||| |||||||| ||| ||||||||| ||||||    
T  24450634 tctgaaggtac-atgaatgactactaccgccaacacggagcgtctaagcaccaaaccctttcg 24450695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 46694043 - 46694101
Alignment:
Q  84 aacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctg 142  Q
    |||||||||||||||||| || ||||| ||||||||| ||| |||||| | ||||||||    
T  46694043 aacgactactaccgccaacacagagcgtctacgcacctaaccctttcgggaaatatctg 46694101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 26130004 - 26129924
Alignment:
Q  71 tgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctgtcaaatcaaa 152  Q
    |||||||||| |||| | |||| |||||||| ||||||||||||||||||||||||| ||||| || ||||| | |||||||    
T  26130004 tgaaggtacg-ttaatgtctaccaccgccaacacggagcgactacgcaccaaactctctcgagcaacatctgacgaatcaaa 26129924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 37987711 - 37987758
Alignment:
Q  84 aacgactactaccgccaatacggagcgactacgcaccaaactctttcg 131  Q
    |||||||||||||||||| |||||||| ||||||||| ||| ||||||    
T  37987711 aacgactactaccgccaacacggagcgtctacgcacctaaccctttcg 37987758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 2569397 - 2569353
Alignment:
Q  89 ctactaccgccaatacggagcgactacgcaccaaactctttcgag 133  Q
    ||||||| |||||| ||||| ||||||||||||||||||||||||    
T  2569397 ctactactgccaatccggagtgactacgcaccaaactctttcgag 2569353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 26070682 - 26070602
Alignment:
Q  62 aaacaattctgaaggtacgattaacgactactaccgccaatacggagcgactacgcaccaaactctttcgagtaatatctg 142  Q
    ||||| || ||||||||| ||||| ||||||||||||| | |||||||||| | | |||||||||| ||||| || |||||    
T  26070682 aaacagttatgaaggtacaattaatgactactaccgccgacacggagcgacaatgaaccaaactctatcgagcaacatctg 26070602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University