View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1375_low_13 (Length: 407)
Name: NF1375_low_13
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 63 - 381
Target Start/End: Original strand, 8469628 - 8469947
Alignment:
| Q |
63 |
tggtgacaaacaggtttcttgatagagctgctattatttctactaaagagaagaacaaattgctagagaaagccgaaaa-tccaaatccttggaaactct |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8469628 |
tggtgacaaacaggtttcttgatagagcagctattatttctactaaagaaaagaaccaattgctagagaaagctgaaaaatccaaatccttggaaactct |
8469727 |
T |
|
| Q |
162 |
gcactgtgacacaagttgaagaagtgaaatgtattttgagactattgccggtttggttatgcaccatcttctcctctgtcgtcttcatacaaatgctttc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8469728 |
gcactgtgacacaagttgaagaagtgaaatgtattttgagactattgccagtttggttatgcaccatcttctcctccgtcgtcttcatacaaatgctttc |
8469827 |
T |
|
| Q |
262 |
tctattcgtcgagcaaggttcaacgatgaacagaaaattttacaagtttgaaatccctcctgcaagcatgacagcattcgacatcattagcacatcagca |
361 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8469828 |
tctattcgtcgagcaaggctcaacaatgaacagaaaattttacaagtttgaaatccctcctgcaagcatgacagcattcgacatcattagcacatcagca |
8469927 |
T |
|
| Q |
362 |
ttcatcatattattcgacat |
381 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
8469928 |
ttcatcatgttattcgacat |
8469947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 221 - 379
Target Start/End: Complemental strand, 8126739 - 8126581
Alignment:
| Q |
221 |
tgcaccatcttctcctctgtcgtcttcatacaaatgctttctctattcgtcgagcaaggttcaacgatgaacagaaaattttacaagtttgaaatccctc |
320 |
Q |
| |
|
||||| |||||||||||| || ||||||||| ||||||||||||| || ||||||||||| || ||| |||||| ||||| ||||||| | ||||||| |
|
|
| T |
8126739 |
tgcacaatcttctcctctagtgttttcatacaattgctttctctatttgttgagcaaggttctacaatggacagaacatttttcaagtttcagatccctc |
8126640 |
T |
|
| Q |
321 |
ctgcaagcatgacagcattcgacatcattagcacatcagcattcatcatattattcgac |
379 |
Q |
| |
|
|| |||||||||||||||| || ||||| ||||||||| |||| ||||||||| ||||| |
|
|
| T |
8126639 |
cttcaagcatgacagcatttgatatcataagcacatcaacatttatcatattactcgac |
8126581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 47559164 - 47559231
Alignment:
| Q |
1 |
catctttgaatttttggagttcgatttcaatttcaatcagtaacaaaggttgttgctatctgtggtga |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47559164 |
catctttgaatttttggagttcgatttcaatttcaatcagtaacaaaggttgttgctatctctggtga |
47559231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Original strand, 2745335 - 2745419
Alignment:
| Q |
164 |
actgtgacacaagttgaagaagtgaaatgtattttgagactattgccggtttggttatgcaccatcttctcctctgtcgtcttca |
248 |
Q |
| |
|
|||||||||||||| |||||||||||||| || || ||| || | || ||||||||||||| || || | |||||| ||||||| |
|
|
| T |
2745335 |
actgtgacacaagtagaagaagtgaaatgcatattaagattactcccaatttggttatgcactatattattctctgttgtcttca |
2745419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University