View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375_low_15 (Length: 384)
Name: NF1375_low_15
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 99 - 370
Target Start/End: Complemental strand, 42852696 - 42852425
Alignment:
| Q |
99 |
atgaacaagtccgagcattacagaaatctccagaatggtgtgttcttgttaacaactttgattcacatagtttttcttcccatactttgttcatattccc |
198 |
Q |
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| T |
42852696 |
atgaacaagtccgagcattacagaaatctccagaatggtgtgttcttgttaacaactttgattcacatagtttttcttcccatactttgttcatattccc |
42852597 |
T |
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| Q |
199 |
tatcattcaaacttggatgttgtatggtggcacataatggtatccacaacatatcaaattctcatannnnnnnaatcatgttttatgtataggcctgaaa |
298 |
Q |
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| T |
42852596 |
tatcattcaaacttggatgttgtatggtggcatataatggtatccacaacatatcaaattctcatatttttttaatcatgttttatgtataggcctgaaa |
42852497 |
T |
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| Q |
299 |
tatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataagggatgatgatg |
370 |
Q |
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| T |
42852496 |
tatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataagggatgatgatg |
42852425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 370
Target Start/End: Complemental strand, 42852352 - 42852149
Alignment:
| Q |
168 |
gtttttcttcccatactttgttcatattccctat--cattcaaacttggatgttgtatggtggcacataatggtatccacaacatatcaaattctcatan |
265 |
Q |
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| T |
42852352 |
gttttacttcacatgctttgtttatattctctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatat |
42852253 |
T |
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| Q |
266 |
nnnnnnaatcatgtttt-atgtataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataagggatg |
364 |
Q |
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| T |
42852252 |
tttt--aatcatttttttatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgatg |
42852155 |
T |
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| Q |
365 |
atgatg |
370 |
Q |
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| T |
42852154 |
atgatg |
42852149 |
T |
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