View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375_low_2 (Length: 494)
Name: NF1375_low_2
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 398
Target Start/End: Original strand, 13138711 - 13139097
Alignment:
| Q |
11 |
acaatattaagtcatattttaatccttattgtgcatcaatgaaactatgatcaaataacacaaatgttttctaaaatcattttacacagttttatttttg |
110 |
Q |
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| T |
13138711 |
acaatattaagtcagattttaatccttattgtgcatcaatgaaactatgatcaaataacacaaatgttttctaaaatcattttacacagttttatttttg |
13138810 |
T |
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| Q |
111 |
ttgttagaactagacaacnnnnnnnngtcacaaaatacatctttcattggcatgaacatgatgtatgaaacattgaggtcaacatgtattcttttaaacg |
210 |
Q |
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| T |
13138811 |
ttgttagaactagacaacttttttt-gtcacaaaatacatctttcattggcatgaacatgatgtattaaacattgaggtcatcatgtattcttttaaacg |
13138909 |
T |
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| Q |
211 |
tatatgatcattctatcaatcattttttaattgtattaattaataaaactttcagtctcaacctccttaattgaggccttttttgtttattaaaactaat |
310 |
Q |
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| T |
13138910 |
tatatgatcattctatcaatcattttttaattgtattaattaataaaactttcagtctcaacctccttaattgaggccttttttgtttattaaaactaat |
13139009 |
T |
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| Q |
311 |
gtcaannnnnnnnatcggtgacctaataaaagtagagctttagcagattttattgaggtccttatcattgtcaactttgtctcataat |
398 |
Q |
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| T |
13139010 |
gtcaattttttttatcggtgacctaataaaagtagagctttagcagattttattgaggtccttatcattgtcaactttgcctcataat |
13139097 |
T |
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