View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375_low_21 (Length: 292)
Name: NF1375_low_21
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 158 - 280
Target Start/End: Complemental strand, 35936856 - 35936734
Alignment:
| Q |
158 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaaaacagtctccaacactgaacattcaaccccactc |
257 |
Q |
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| T |
35936856 |
ccacacttcgaattcaaacatttagaaatgagaaaacagtatccatcaaacatttagaaatcagaacacagtctccaacactgaacattcaaccccactc |
35936757 |
T |
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| Q |
258 |
acaaaaatcaagcattccagaat |
280 |
Q |
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| T |
35936756 |
acaaaaatcaagcattccagaat |
35936734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 35936991 - 35936908
Alignment:
| Q |
23 |
atcatcaaaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacattcgactccactg |
106 |
Q |
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| T |
35936991 |
atcatcaaaatcaaccacacttcaaattcaaacatttaagaatcagagaaaacaacatccaaaaccgaacactcgactccactg |
35936908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 35936870 - 35936833
Alignment:
| Q |
23 |
atcatcaaaatcaaccacacttcaaattcaaacattta |
60 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
35936870 |
atcatcaaaatcaaccacacttcgaattcaaacattta |
35936833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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