View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375_low_6 (Length: 459)
Name: NF1375_low_6
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 30 - 392
Target Start/End: Complemental strand, 6588953 - 6588591
Alignment:
| Q |
30 |
tatataatatcaactaaatcaacacatttccaatagtcccatttgaaattcaaaatatatagtagtagaaaatagtgtgatcttaaatttaatctaccat |
129 |
Q |
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| T |
6588953 |
tatataatatcaactaaatcaacacatttccaatagtcccatttgaaattcaaaatatatagtagtagaaaatagtgtgatcttaaatttaatctaccat |
6588854 |
T |
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| Q |
130 |
ggctatcgacagtcctctactgaataacggtgtcaactctcctcctagtgttgttcatcatgaagaagagaagccactgaaaattgttcacaaaattggg |
229 |
Q |
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| T |
6588853 |
ggctatcgacagtcctctactgaataacggtgtcaactctcctcctagtgttgttcatcatgaagaagagaagccactgaaaattgttcacaaaattggg |
6588754 |
T |
|
| Q |
230 |
gtggagtcgaagaagctatggaaaatagccggtccaacaatcttaacttctttatctcagtactcgcttggtgcattcacttctacgtttgttggccatg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6588753 |
gtggagtcgaagaagctatggaaaatagccggtccaacaatcttaacttctttatctcagtactcgcttggtgcattcacttctacgtttgttggccatg |
6588654 |
T |
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| Q |
330 |
ttaacgagctcgatcttgcagctttttctgttgaaaattctgttattgctggtttcgcctttg |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6588653 |
ttaacgagctcgatcttgcagctttttctgttgaaaattctgttattgctggtttcgcctttg |
6588591 |
T |
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