View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375_low_8 (Length: 457)
Name: NF1375_low_8
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 94 - 449
Target Start/End: Complemental strand, 49245221 - 49244866
Alignment:
| Q |
94 |
acctttaaatcccaaagaaaaacaaaccaattattcatcaattgaacctacaaactcataatctctctcttaatcttctcaataacagcaccattttgaa |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49245221 |
acctttaaatcccaaagaaaaacaaaccaattattcatcaattgaacctacaaactcataatctctctcttaatcttctcaataacagcaccattttgaa |
49245122 |
T |
|
| Q |
194 |
ccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaaaataacagt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49245121 |
ccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaaaataacagt |
49245022 |
T |
|
| Q |
294 |
aatcaaaccaggtttagccacagattcaatcccaaagaaagccacattgcttgaaccagtaaccgtaacagagcaattgggattcctattacgacaggga |
393 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49245021 |
aatcaacccaggtttagccacagattcaatcccaaagaaagccacattgcttgaaccagtaaccgtaacagagcaattgggattcctattacgacaggga |
49244922 |
T |
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| Q |
394 |
accaacaaattaaaaaccccttcaacatgtttctttgattttgattccttcatctc |
449 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
49244921 |
accaacaaattaaaacccctttcaacatgtttctttgattttgattccttcatctc |
49244866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 185 - 313
Target Start/End: Complemental strand, 49059504 - 49059376
Alignment:
| Q |
185 |
cattttgaaccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaa |
284 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||||||| ||| | || || | |||||| |
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| T |
49059504 |
cattttgaaccaatgcagtgattgccaagatcaaatttccatcattaacagagacatttgccactaaaatctcagcttgattgtccacaaatatcttcaa |
49059405 |
T |
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| Q |
285 |
aataacagtaatcaaaccaggtttagcca |
313 |
Q |
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||| ||||| |||||||||| |||||| |
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| T |
49059404 |
aatcgcagtagccaaaccaggtctagcca |
49059376 |
T |
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