View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1375_low_9 (Length: 421)
Name: NF1375_low_9
Description: NF1375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1375_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 12 - 421
Target Start/End: Original strand, 44431128 - 44431537
Alignment:
| Q |
12 |
atgaagctaactgaatcctcgatgaaggaccgcacaatgcgacaacaatcaggcaccgtggatgaaaacggtgccaaataaggaaaagcaggtatgatat |
111 |
Q |
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| T |
44431128 |
atgaagctaactgaatcctcgatgaaggaccgcacaatgcgacaacaatcaggcaccgtggatgaaaacggtgccaaataaggaaaagcaggtatgatat |
44431227 |
T |
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| Q |
112 |
ccgatgtttgaatctgaaaagaaagcacattcattgaatattcatactctttcttcatcaacatctgctcaaacttatcaccacctatagcctcggctat |
211 |
Q |
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| T |
44431228 |
ccgatgtttgaatctgaaaagaaagcacattcattgaatattcatactctttcttcatcaacatctgctcaaacttatcaccacctatagcctcggctat |
44431327 |
T |
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| Q |
212 |
ctgcttcctacaatctgacaacagcaattcatgatacttatccctatgcttgcttaaaacatcaagcaacgcatcaatcgggtaaccaaatctacgcagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44431328 |
ctgcttcctacaatctgacaacagcaattcatgatacttatccctatgcttgcttaaaacatcaagcaacgcatcaatcgggtaaccaaatctacgcagt |
44431427 |
T |
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| Q |
312 |
gttactcctaatagactcacataatccttaatcaacaaaagatgattagcagtttgcattctagagaactgatcctccaacacagaacacattttgctaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44431428 |
gttactcctaatagactcacataatccttaatcaacaaaagatgattggcagtttgcattctagagaactgatcctccaacacagaacacattttgctaa |
44431527 |
T |
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| Q |
412 |
cagcaatctc |
421 |
Q |
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| T |
44431528 |
cagcaatctc |
44431537 |
T |
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