View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376-INSERTION-1 (Length: 294)
Name: NF1376-INSERTION-1
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376-INSERTION-1 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 8 - 274
Target Start/End: Complemental strand, 24991188 - 24990922
Alignment:
| Q |
8 |
aaaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttgaa |
107 |
Q |
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| T |
24991188 |
aaaatgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttgaa |
24991089 |
T |
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| Q |
108 |
acctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatgggaagcaactttggtgatccatgaattcccaatagtacagtc |
207 |
Q |
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| T |
24991088 |
acctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatgggaagcaactttggtgatccatgaattcccaatagtacagtc |
24990989 |
T |
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| Q |
208 |
aatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaatttttaactagtaa |
274 |
Q |
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| T |
24990988 |
aatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaatttttaactagtaa |
24990922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 8 - 264
Target Start/End: Complemental strand, 24994857 - 24994607
Alignment:
| Q |
8 |
aaaacgcgtcgcataatttgagtttttgcaagtagtgatgatcatttacccctttcatgcattctgtggcaagattaggcaattgacttttgcctttgaa |
107 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24994857 |
aaaacgcatcgcataatttgagtttttgc---tagtgatgatcatt-acccctttcatgcattctgtggcaagattaggcaattgacttttgcctttgaa |
24994762 |
T |
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| Q |
108 |
acctccgaacactgaaccttcgattctgcgaccatcaaagagctccattgggtggatgggaagcaactttggtgatccatgaattcccaatagtacagtc |
207 |
Q |
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| T |
24994761 |
acctccaaagaccgatccttcgattttgcggccatcaaagagctccattgggtggagaggaagtaactttggtgatgcatgaattcccaatagtatagtc |
24994662 |
T |
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| Q |
208 |
aatccccaaccctacattatacaaaattttacatgaaatttgatagtgcacaatttt |
264 |
Q |
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|||||||||||||||||||||| |||| |||| ||||||||||||||||| |||| |
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| T |
24994661 |
aatccccaaccctacattatac--aattagacataaaatttgatagtgcacagtttt |
24994607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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