View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1376-INSERTION-2 (Length: 113)

Name: NF1376-INSERTION-2
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1376-INSERTION-2
NF1376-INSERTION-2
[»] chr2 (15 HSPs)
chr2 (7-110)||(22379316-22379419)
chr2 (7-113)||(22564746-22564851)
chr2 (7-110)||(27608070-27608174)
chr2 (7-105)||(3192084-3192182)
chr2 (7-110)||(24185487-24185590)
chr2 (9-110)||(10194003-10194104)
chr2 (9-102)||(33527690-33527783)
chr2 (9-110)||(34427019-34427120)
chr2 (7-76)||(3191848-3191917)
chr2 (22-110)||(17595988-17596076)
chr2 (7-93)||(38903783-38903869)
chr2 (30-81)||(41214211-41214262)
chr2 (21-104)||(13346721-13346804)
chr2 (7-104)||(19381355-19381453)
chr2 (7-59)||(17555949-17556001)
[»] chr8 (9 HSPs)
chr8 (7-111)||(19195924-19196029)
chr8 (10-102)||(14723381-14723473)
chr8 (9-106)||(12658174-12658271)
chr8 (11-92)||(14774843-14774924)
chr8 (11-84)||(18921139-18921212)
chr8 (13-102)||(28184370-28184459)
chr8 (11-84)||(31451603-31451676)
chr8 (18-92)||(11306432-11306506)
chr8 (30-81)||(29315074-29315125)
[»] scaffold0301 (1 HSPs)
scaffold0301 (7-110)||(4878-4981)
[»] chr3 (10 HSPs)
chr3 (9-102)||(7578623-7578716)
chr3 (9-109)||(9701512-9701612)
chr3 (9-102)||(31136838-31136931)
chr3 (7-107)||(14960381-14960481)
chr3 (11-111)||(27537919-27538019)
chr3 (8-110)||(22721120-22721222)
chr3 (14-102)||(1344109-1344191)
chr3 (13-78)||(41517764-41517829)
chr3 (11-80)||(13598773-13598842)
chr3 (34-109)||(18387479-18387554)
[»] chr4 (9 HSPs)
chr4 (7-111)||(11673472-11673576)
chr4 (47-113)||(9047443-9047509)
chr4 (9-102)||(55468934-55469026)
chr4 (11-92)||(8500211-8500292)
chr4 (7-110)||(43096106-43096209)
chr4 (10-92)||(9217766-9217847)
chr4 (11-92)||(48710746-48710827)
chr4 (9-89)||(27449219-27449299)
chr4 (27-110)||(29961862-29961945)
[»] chr1 (8 HSPs)
chr1 (9-110)||(34428453-34428554)
chr1 (19-104)||(48920966-48921051)
chr1 (12-95)||(22634787-22634870)
chr1 (7-110)||(19280573-19280676)
chr1 (7-110)||(45992405-45992508)
chr1 (9-101)||(40679159-40679251)
chr1 (27-108)||(12213174-12213255)
chr1 (29-110)||(46262205-46262286)
[»] scaffold0292 (1 HSPs)
scaffold0292 (12-95)||(21574-21657)
[»] chr7 (9 HSPs)
chr7 (7-110)||(10012861-10012964)
chr7 (9-108)||(37247092-37247191)
chr7 (9-102)||(19921174-19921267)
chr7 (18-109)||(45088707-45088798)
chr7 (11-92)||(580553-580634)
chr7 (9-110)||(36585672-36585775)
chr7 (7-95)||(28603681-28603769)
chr7 (54-92)||(20534828-20534866)
chr7 (31-92)||(13043293-13043354)
[»] scaffold0128 (1 HSPs)
scaffold0128 (9-95)||(23381-23467)
[»] scaffold0126 (1 HSPs)
scaffold0126 (7-110)||(43975-44078)
[»] scaffold0664 (1 HSPs)
scaffold0664 (27-110)||(2161-2244)
[»] chr6 (4 HSPs)
chr6 (9-102)||(7705815-7705908)
chr6 (7-41)||(34493442-34493476)
chr6 (13-70)||(26268339-26268395)
chr6 (36-92)||(17238679-17238735)
[»] scaffold1544 (1 HSPs)
scaffold1544 (11-111)||(1233-1333)
[»] scaffold0051 (1 HSPs)
scaffold0051 (7-95)||(62832-62920)
[»] scaffold0490 (1 HSPs)
scaffold0490 (7-92)||(10215-10300)
[»] chr5 (5 HSPs)
chr5 (11-92)||(23616832-23616913)
chr5 (11-92)||(23848231-23848312)
chr5 (7-108)||(4151814-4151915)
chr5 (9-92)||(38622938-38623020)
chr5 (86-113)||(21747529-21747556)


Alignment Details
Target: chr2 (Bit Score: 84; Significance: 2e-40; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 22379316 - 22379419
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    |||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22379316 agaaagaaaagggggactatgccaaaaccttttcagaaggtgttgaatctaaagttgggcattcccaacctattcctagtgtactctcccctaatgaaat 22379415  T
Q  107 cagg 110  Q
    ||||    
T  22379416 cagg 22379419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-37
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 22564851 - 22564746
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||    
T  22564851 agaaagaaaagggagaatataccaaaaccttttcaaaag-tgttaaatctaaagttttgcattcccaacctattcctagtgtactctccactaatgaaat 22564753  T
Q  107 caggagt 113  Q
    |||||||    
T  22564752 caggagt 22564746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 27608174 - 27608070
Alignment:
Q  7 agaaagaaaagggggactataccaaaacctttt-caaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaa 105  Q
    |||||||||||||||||||| ||||||| |||| || ||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  27608174 agaaagaaaagggggactatgccaaaacgtttttcagaaggtgttgaatctaaagttgggcattcccagcctattcctagtgtactctcccctaatgaaa 27608075  T
Q  106 tcagg 110  Q
    |||||    
T  27608074 tcagg 27608070  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 7 - 105
Target Start/End: Complemental strand, 3192182 - 3192084
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaa 105  Q
    ||||||||||||| ||||||||| ||| ||||||||||  ||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  3192182 agaaagaaaagggagactatacctaaatcttttcaaaatgtgttaaatctaaagttgggtattcccaacatattcgtagtgtactctcctctaatgaaa 3192084  T

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Target: chr2; HSP #5
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 24185487 - 24185590
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    |||||||||||||||||   ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  24185487 agaaagaaaagggggaccgaaccaaaaccttttcaaaagttgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaataaaat 24185586  T
Q  107 cagg 110  Q
    ||||    
T  24185587 cagg 24185590  T

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Target: chr2; HSP #6
Raw Score: 58; E-Value: 7e-25
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 10194003 - 10194104
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 108  Q
    ||||||| || |||||||||||||||||||||||||| |||||||||| || |||  |||| | |||||||||||| |||||||||| ||||||||||||    
T  10194003 aaagaaacggaggactataccaaaaccttttcaaaaggtgttaaatctgaaattgaacatttctaacctattcctattgtactctcccctaatgaaatca 10194102  T
Q  109 gg 110  Q
    ||    
T  10194103 gg 10194104  T

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Target: chr2; HSP #7
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 33527783 - 33527690
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    ||||||||||| ||||||||||||||||||||||||| |  |||||||||||||||||||  | ||||| |||||| |||||||| ||||||||    
T  33527783 aaagaaaagggagactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatatctaacctgttcctattgtactcttctctaatg 33527690  T

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Target: chr2; HSP #8
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 34427019 - 34427120
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 108  Q
    |||||||||  |||||| |||||||| |||| ||||| |||||||| | || ||||| |||||||||||||||||| ||||||||||  |||||||||||    
T  34427019 aaagaaaagaaggactaaaccaaaacttttttaaaaggtgttaaatttgaaattgggtattcccaacctattcctattgtactctcccttaatgaaatca 34427118  T
Q  109 gg 110  Q
    ||    
T  34427119 gg 34427120  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 3191917 - 3191848
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacc 76  Q
    ||||||| |||||  ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||    
T  3191917 agaaagagaagggaaactataccaaaaccttttcaaaagatgttaaatttaaagttaggcatttccaacc 3191848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 17595988 - 17596076
Alignment:
Q  22 actataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 110  Q
    |||||||||||||||||| ||||| |||||||||| || || |||||||||||| |||| | |||||| |||  |||||||||||||||    
T  17595988 actataccaaaacctttttaaaaggtgttaaatctgaaattaggcattcccaacttatttccagtgtaatctattctaatgaaatcagg 17596076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 38903869 - 38903783
Alignment:
Q  7 agaaagaaaagggggactataccaaa-accttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactct 93  Q
    |||||||||||||| |||| |||||| ||||||||| |||||  ||||||| || |||||||| |||||||||||| |||||||||||    
T  38903869 agaaagaaaagggg-actagaccaaataccttttcataagataataaatctgaaattgggcatgcccaacctattcatagtgtactct 38903783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 41214211 - 41214262
Alignment:
Q  30 aaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattc 81  Q
    |||||||||||||||| || |  |||||||||||||||||||||||||||||    
T  41214211 aaaaccttttcaaaaggtgatgtatctaaagttgggcattcccaacctattc 41214262  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 13346804 - 13346721
Alignment:
Q  21 gactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaa 104  Q
    ||||||||||||||||||| ||||| ||   |||||||| || || |||||||| ||||| ||| ||||||| || ||||||||    
T  13346804 gactataccaaaaccttttgaaaagttgaagaatctaaaattaggtattcccaaactatttctaatgtactcacccctaatgaa 13346721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 19381355 - 19381453
Alignment:
Q  7 agaaagaaaagggggacta-taccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaa 104  Q
    |||||||| |||||||| | | |||||||||||| | ||| |  |||||||| |||||  ||| |||||| |||||||||||||||| || ||||||||    
T  19381355 agaaagaatagggggacaaatgccaaaaccttttgagaaggttgtaaatctatagttgaacatgcccaacttattcctagtgtactcccccctaatgaa 19381453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 17555949 - 17556001
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaa 59  Q
    ||||| || ||||||||||||||||||||| |||||||| ||  |||||||||    
T  17555949 agaaaaaagagggggactataccaaaacctcttcaaaagttgacaaatctaaa 17556001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 8e-37; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 8e-37
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 19195924 - 19196029
Alignment:
Q  7 agaaagaaaagggggactata-ccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaa 105  Q
    ||||||||||||||||||| | |||||||||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19195924 agaaagaaaagggggactaaagccaaaaccttttcaaaaggtggtgaatctaaagttgggcatacccaacctattcctagtgtactctcctctaatgaaa 19196023  T
Q  106 tcagga 111  Q
    ||||||    
T  19196024 tcagga 19196029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 14723473 - 14723381
Alignment:
Q  10 aagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    ||||||||||||||||||||||||||||||| ||||||  ||||| ||||||||||||| |||||||| ||| || |||||||||||||||||    
T  14723473 aagaaaagggggactataccaaaaccttttcgaaagatagtaaatttaaagttgggcatacccaacctgttcttattgtactctcctctaatg 14723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 12658174 - 12658271
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    |||||||||||||| |||||||||||||||| ||||| |||||||| | || |||| |||| |||||| ||||||| | |||||||| ||||||||||    
T  12658174 aaagaaaagggggattataccaaaacctttttaaaaggtgttaaatttgaatttggacattgccaacccattcctaatatactctcccctaatgaaat 12658271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 14774843 - 14774924
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    ||||||||||||||| ||||||||||||||||||| ||  | | |||||||||||||| ||||||||||||||| |||||||    
T  14774843 agaaaagggggactaaaccaaaaccttttcaaaaggtgacatacctaaagttgggcatacccaacctattcctattgtactc 14774924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 18921139 - 18921212
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattccta 84  Q
    |||||||||||||||  | |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  18921139 agaaaagggggactacgctaaaaccttttcaaaaggtgttaaatctaaaattggacattcccaacctattccta 18921212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 28184370 - 28184459
Alignment:
Q  13 aaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    ||||||||||| |||||||||  |||||||||| |   |||| ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  28184370 aaaagggggaccataccaaaaatttttcaaaaggtagaaaatttaaagttgggcatacccaacctattcctattgtactctcctctaatg 28184459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 31451603 - 31451676
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattccta 84  Q
    |||||| ||||||||  | |||||||||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  31451603 agaaaatggggactaggctaaaaccttttcaaaaggtgttaaatctaaaattggccattcccaacctattccta 31451676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 11306506 - 11306432
Alignment:
Q  18 ggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    |||||| | ||||||||||||||||||| ||  | | |||||||||||||| || |||||||||||| |||||||    
T  11306506 ggggaccaaaccaaaaccttttcaaaaggtgacatacctaaagttgggcatacctaacctattcctattgtactc 11306432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 29315125 - 29315074
Alignment:
Q  30 aaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattc 81  Q
    |||||||||||||||  || |  ||||||||||||||||||| |||||||||    
T  29315125 aaaaccttttcaaaatgtgatgtatctaaagttgggcattccgaacctattc 29315074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 76; Significance: 1e-35; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 76; E-Value: 1e-35
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 4878 - 4981
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    |||||||||||||||||||| |||||||||||||| ||  |||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||    
T  4878 agaaagaaaagggggactatgccaaaaccttttcagaaagtgttaaatctaaagttaggcattcccagcctattcctagtgtactctcccctaatgaaat 4977  T
Q  107 cagg 110  Q
    ||||    
T  4978 cagg 4981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 1e-29; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 7578716 - 7578623
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    |||||||| |||||||||||||||||||||||||||| |  ||||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  7578716 aaagaaaaaggggactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaacctattcctattgcactctcctctaatg 7578623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 9701612 - 9701512
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 108  Q
    ||||||||||||||||||||||||| ||||||||||| |  |||||||||| || ||||| ||||||||||||||| ||||||||||||||||||| |||    
T  9701612 aaagaaaagggggactataccaaaatcttttcaaaaggtagtaaatctaaattttggcatacccaacctattcctattgtactctcctctaatgaagtca 9701513  T
Q  109 g 109  Q
    |    
T  9701512 g 9701512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 31136931 - 31136838
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    ||||||||||| ||||||||||||||||||||||||| |  ||||||||||||||||||| || ||||| |||||| |||||||||||||||||    
T  31136931 aaagaaaagggagactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacctaacctgttcctattgtactctcctctaatg 31136838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 14960481 - 14960381
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    |||||||||||||||||   |||||||||||||||||||| |||||| || || |||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  14960481 agaaagaaaagggggaccgaaccaaaaccttttcaaaagacgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaataaaat 14960382  T
Q  107 c 107  Q
    |    
T  14960381 c 14960381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 27538019 - 27537919
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 110  Q
    ||||||||||||||||||||||||||||||||||| |   |||| | || |||||||  |||||||||||| |||||||||||||||||||||| |||||    
T  27538019 agaaaagggggactataccaaaaccttttcaaaaggtacaaaatttgaaattgggcaagcccaacctattcttagtgtactctcctctaatgaattcagg 27537920  T
Q  111 a 111  Q
    |    
T  27537919 a 27537919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 22721120 - 22721222
Alignment:
Q  8 gaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatc 107  Q
    |||||||||||||||| | |||||||||||||||| || ||||||| || || |||||||| ||||||||||||||  |||||||||| || ||||||||    
T  22721120 gaaagaaaagggggaccaaaccaaaaccttttcaataggtgttaaacctgaaattgggcatacccaacctattcctgatgtactctccccttatgaaatc 22721219  T
Q  108 agg 110  Q
    |||    
T  22721220 agg 22721222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 1344109 - 1344191
Alignment:
Q  14 aaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    ||||||||||||||||||||||||||||||||||        ||||||| ||||| | |||||| |||||| |||||||||||||||||    
T  1344109 aaagggggactataccaaaaccttttcaaaagat------agtaaagtttggcatactcaacctgttcctattgtactctcctctaatg 1344191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 41517764 - 41517829
Alignment:
Q  13 aaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaaccta 78  Q
    |||||| |||||||||||||||||||||||||| ||  |||||| || || |||||||||||||||    
T  41517764 aaaaggaggactataccaaaaccttttcaaaagttgcaaaatctgaaattaggcattcccaaccta 41517829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 13598773 - 13598842
Alignment:
Q  11 agaaaagggggactataccaaaacctt-ttcaaaagatgttaaatctaaagttgggcattcccaacctatt 80  Q
    |||||||| ||| |||||||||||||| || |||||| | |||| ||||||||||||||||| ||||||||    
T  13598773 agaaaaggaggattataccaaaaccttcttaaaaaga-gataaacctaaagttgggcattcctaacctatt 13598842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 18387554 - 18387479
Alignment:
Q  34 ccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcag 109  Q
    |||||||||||| |  |||||||| |||| | ||| || |||||||| |||||||||||| | |||||||| ||||    
T  18387554 ccttttcaaaaggttgtaaatctatagttagacatccctaacctatttctagtgtactcttccctaatgaagtcag 18387479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 5e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 11673472 - 11673576
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    |||||||||||||||||   ||||||||||||||||||| ||   ||||||||||||||||||||||||||||| ||||||||||||||||||||| | |    
T  11673472 agaaagaaaagggggaccgaaccaaaaccttttcaaaaggtgcagaatctaaagttgggcattcccaacctatttctagtgtactctcctctaatggatt 11673571  T
Q  107 cagga 111  Q
    |||||    
T  11673572 cagga 11673576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 7e-28
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 9047443 - 9047509
Alignment:
Q  47 tgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcaggagt 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9047443 tgttaaatctaaagttgggcattctcaacctattcctagtgtactctcctctaatgaaatcaggagt 9047509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 55469026 - 55468934
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    ||||||||||||| ||||||||||||||||||||||| |  ||||||||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  55469026 aaagaaaaggggg-ctataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaatctattcctattgtactctcctctaatg 55468934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 8500292 - 8500211
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    |||||||||||| || ||||| ||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||    
T  8500292 agaaaagggggattagaccaagaccttttcaaaaggtggtaaatctaaagttgggcatttccaacctattcctaatgtactc 8500211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 43096106 - 43096209
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    ||||||||||||||||  | |||||||||||||||| || ||||||| || || |||||||| ||||||||||| ||  |||||||||| ||||||||||    
T  43096106 agaaagaaaagggggatcaaaccaaaaccttttcaataggtgttaaacctgaaattgggcatacccaacctatttctgatgtactctcccctaatgaaat 43096205  T
Q  107 cagg 110  Q
    ||||    
T  43096206 cagg 43096209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 9217847 - 9217766
Alignment:
Q  10 aagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    |||||||||||||| | |||||| |||||||||||| |   | ||||||| |||||||||||||||||||||||| |||||||    
T  9217847 aagaaaagggggaccaaaccaaa-ccttttcaaaaggttacatatctaaaattgggcattcccaacctattcctattgtactc 9217766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 48710827 - 48710746
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    ||||||||||||| | || |||||||||||||||| |   | | |||||||||||| | ||||||||||||||| |||||||    
T  48710827 agaaaagggggaccaaactaaaaccttttcaaaaggtaacatacctaaagttgggcctacccaacctattcctattgtactc 48710746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 27449299 - 27449219
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgta 89  Q
    |||||||||| |||| | |||| |||||||||||||| ||  | || ||||||||||||| |||||| |||||||| ||||    
T  27449299 aaagaaaaggaggacaacaccagaaccttttcaaaaggtggcatatttaaagttgggcatacccaacatattcctattgta 27449219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 29961862 - 29961945
Alignment:
Q  27 accaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 110  Q
    ||||||||||||||||||| || | || ||  | ||||||||  |||||||| ||||| |||||||||| ||||| ||||||||    
T  29961862 accaaaaccttttcaaaaggtgctgaacctgcaattgggcatatccaacctactcctaatgtactctcccctaattaaatcagg 29961945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 34428554 - 34428453
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 108  Q
    ||||||||||||||| ||||||||||||||||||||| |   |||||||||||||| ||| |||||||| |||||| ||||||||||||||||| |||||    
T  34428554 aaagaaaagggggaccataccaaaaccttttcaaaaggtagaaaatctaaagttggacatacccaacctgttcctattgtactctcctctaatggaatca 34428455  T
Q  109 gg 110  Q
    ||    
T  34428454 gg 34428453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 48921051 - 48920966
Alignment:
Q  19 gggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaa 104  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||| |||||| |||||||||||||||||||    
T  48921051 gggactataccaaaaccttttcaaaaggtagtaaatctaaagttgggcatacccaacctgttcctattgtactctcctctaatgaa 48920966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 22634870 - 22634787
Alignment:
Q  12 gaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 95  Q
    ||||||||||| || ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  22634870 gaaaagggggattagaccaaaaccttttcagaaggtggtaaatctaaagttgggcattcccaacctattcctaatgtactctcc 22634787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 110
Target Start/End: Original strand, 19280573 - 19280676
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    ||||||||||||||||| | ||||||||||||| ||||| ||||||| || || |||||||| |||||| |||||||| |||||||||| ||||| ||||    
T  19280573 agaaagaaaagggggaccaaaccaaaacctttttaaaaggtgttaaacctgaaattgggcatacccaacatattcctaatgtactctcccctaataaaat 19280672  T
Q  107 cagg 110  Q
    ||||    
T  19280673 cagg 19280676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 45992508 - 45992405
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    ||||||||||| ||||| | |||||||||||||||| || |||||||||| || |||||||| |||||| |||||||  |||||||||| ||||||||||    
T  45992508 agaaagaaaagagggaccaaaccaaaaccttttcaataggtgttaaatctgaaattgggcatacccaacttattcctgatgtactctcccctaatgaaat 45992409  T
Q  107 cagg 110  Q
    ||||    
T  45992408 cagg 45992405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 40679251 - 40679159
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaat 101  Q
    ||||||||||||||| | ||||||||||||||||||| |   |||||||||||||||||| |||||||| |||||| | || |||||||||||    
T  40679251 aaagaaaagggggaccaaaccaaaaccttttcaaaaggtagaaaatctaaagttgggcatacccaacctgttcctattataatctcctctaat 40679159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 12213255 - 12213174
Alignment:
Q  27 accaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 108  Q
    ||||||||||||||||||||||||||| || |  |||||||| |||||| |||||||| |||||||||| ||||| ||||||    
T  12213255 accaaaaccttttcaaaagatgttaaacctgatattgggcatacccaacatattcctaatgtactctcccctaataaaatca 12213174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 46262205 - 46262286
Alignment:
Q  29 caaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 110  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||||  |||||||| ||| |||||||||||| ||||||||    
T  46262205 caaaaccttttcaaaaggtgttgaatctgaagttgggcatacccaatatattcctaatgtcctctcctctaattaaatcagg 46262286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 60; Significance: 4e-26; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 21574 - 21657
Alignment:
Q  12 gaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 95  Q
    ||||||||||| || ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| ||||||||||    
T  21574 gaaaagggggattagaccaaaaccttttcagaaggtggtaaatctaaagttgggcattcccaacctattcctaatgtactctcc 21657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 4e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 10012964 - 10012861
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    |||||||||||||||||   ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  10012964 agaaagaaaagggggaccgaaccaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaataaaat 10012865  T
Q  107 cagg 110  Q
    ||||    
T  10012864 cagg 10012861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 37247191 - 37247092
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatca 108  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||| | || |||| |||| |||||| |||||||||||| ||||| ||||||||||||    
T  37247191 aaagaaaagggagactataccaaaaccttttcaaaagatgttgaatatgaaattggacatttccaaccaattcctagtgtattctcccctaatgaaatca 37247092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 19921267 - 19921174
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    ||||||||||||||| | | ||||||||||||||||| |   |||||||||||||| ||| |||||||| |||||| |||||||||||||||||    
T  19921267 aaagaaaagggggaccaaatcaaaaccttttcaaaaggtagaaaatctaaagttggacatacccaacctgttcctattgtactctcctctaatg 19921174  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 45088798 - 45088707
Alignment:
Q  18 ggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcag 109  Q
    |||| ||||||||||||||||||||||||||||||||| ||| |  ||||| ||||||||||| | | ||||||||||  ||||||||||||    
T  45088798 gggggctataccaaaaccttttcaaaagatgttaaatcgaaaatcaggcatacccaacctatttcaaatgtactctcccgtaatgaaatcag 45088707  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 580634 - 580553
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    ||||||||||||| | ||||||||||||||||||| ||  | | |||||||||||||| ||||||||||||||| |||||||    
T  580634 agaaaagggggaccaaaccaaaaccttttcaaaaggtgacatacctaaagttgggcatacccaacctattcctattgtactc 580553  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 36585775 - 36585672
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtact--ctcctctaatgaaat 106  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||| || || || ||||||| || ||||||||||| | |||  |||| ||||||||||    
T  36585775 aaagaaaagggggactgtaccaaaaccttttcaaaaggtgtaaaacctgaaattaggcattctcatcctattcctagagcactccctcccctaatgaaat 36585676  T
Q  107 cagg 110  Q
    ||||    
T  36585675 cagg 36585672  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 28603769 - 28603681
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 95  Q
    ||||||||| || ||| || ||| ||||||| ||||||   | ||||| |||| |||| ||||||||||||||||||| ||||||||||    
T  28603769 agaaagaaagggaggattaaacctaaaccttctcaaaatgagataaatttaaaattggacattcccaacctattcctaatgtactctcc 28603681  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 54 - 92
Target Start/End: Complemental strand, 20534866 - 20534828
Alignment:
Q  54 tctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  20534866 tctaaagttgggcattcccaacctgttcctaatgtactc 20534828  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 13043354 - 13043293
Alignment:
Q  31 aaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    ||||||||||||||| |   | ||||||||||||| | |||||||||||||||| |||||||    
T  13043354 aaaccttttcaaaaggttacatatctaaagttgggtaatcccaacctattcctattgtactc 13043293  T

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Target: scaffold0128 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 23381 - 23467
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 95  Q
    |||||||| ||||| || ||||||||||||||||||| || |||||||||||||||| |||||||||||||||||| ||||||||||    
T  23381 aaagaaaaaggggattagaccaaaaccttttcaaaaggtggtaaatctaaagttgggtattcccaacctattcctaatgtactctcc 23467  T

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Target: scaffold0126 (Bit Score: 56; Significance: 1e-23; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 44078 - 43975
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    ||||||||||||||| |   ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||||| |||||||||| ||||| ||||    
T  44078 agaaagaaaaggggggccgaaccaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaataaaat 43979  T
Q  107 cagg 110  Q
    ||||    
T  43978 cagg 43975  T

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Target: scaffold0664 (Bit Score: 52; Significance: 3e-21; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 2244 - 2161
Alignment:
Q  27 accaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 110  Q
    ||||||||||||||||||| ||||||| || || |||||||| ||||||||||||||| |||||||||| ||||| ||||||||    
T  2244 accaaaaccttttcaaaaggtgttaaacctgaaattgggcatacccaacctattcctaatgtactctcccctaataaaatcagg 2161  T

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Target: chr6 (Bit Score: 50; Significance: 4e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 4e-20
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 7705908 - 7705815
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatg 102  Q
    |||||||| |||||||||||||||||||||| |||| ||  ||||| |||||||||||||  ||||||| ||| || |||||||||||||||||    
T  7705908 aaagaaaatggggactataccaaaacctttttaaaatatagtaaatttaaagttgggcatatccaacctgttcttattgtactctcctctaatg 7705815  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 34493442 - 34493476
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttca 41  Q
    |||||||||||| ||||||||||||||||||||||    
T  34493442 agaaagaaaaggaggactataccaaaaccttttca 34493476  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 26268395 - 26268339
Alignment:
Q  13 aaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattc 70  Q
    ||||||||| |||||||||||||||||||||||||    |||||||| ||||||||||    
T  26268395 aaaaggggg-ctataccaaaaccttttcaaaagatagagaatctaaaattgggcattc 26268339  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 17238679 - 17238735
Alignment:
Q  36 ttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    |||||||||| |  ||||||||||||||||||| ||| || |||||||| |||||||    
T  17238679 ttttcaaaaggtaataaatctaaagttgggcatacccgacttattcctaatgtactc 17238735  T

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Target: scaffold1544 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: scaffold1544
Description:

Target: scaffold1544; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 1333 - 1233
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaatcagg 110  Q
    ||||||||||||| | ||||||||||||||||||| |   ||| || || |||||||  |||||||||||| |||||||||||||||||||||| |||||    
T  1333 agaaaagggggacaaaaccaaaaccttttcaaaaggtacaaaacctgaaattgggcaagcccaacctattcttagtgtactctcctctaatgaattcagg 1234  T
Q  111 a 111  Q
    |    
T  1233 a 1233  T

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Target: scaffold0051 (Bit Score: 45; Significance: 4e-17; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 62920 - 62832
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcc 95  Q
    |||||||||||||||| || ||||| ||||||||| ||| |  ||||||||||||||||  ||||||||||||| ||| ||||||||||    
T  62920 agaaagaaaagggggaataaaccaagaccttttcataaggtagtaaatctaaagttgggttttcccaacctatttctaatgtactctcc 62832  T

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Target: scaffold0490 (Bit Score: 43; Significance: 6e-16; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 10300 - 10215
Alignment:
Q  7 agaaagaaaagggggactata-ccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    |||||||||||||||| | || |||||||||||||||||| ||  |||||| ||||||||||| ||||||||||||||| |||||||    
T  10300 agaaagaaaaggggga-tctagccaaaaccttttcaaaaggtgacaaatctgaagttgggcatacccaacctattcctattgtactc 10215  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 23616832 - 23616913
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    ||||||||||||| | ||||||||||||||||||| ||  | | || ||||||||||| ||||||||||||||| |||||||    
T  23616832 agaaaagggggaccaaaccaaaaccttttcaaaaggtgacatacctgaagttgggcatacccaacctattcctattgtactc 23616913  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 23848231 - 23848312
Alignment:
Q  11 agaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    ||||||||||||| | ||||||||||||||||||| ||  | | || ||||||||||| ||||||||||||||| |||||||    
T  23848231 agaaaagggggaccaaaccaaaaccttttcaaaaggtgacatacctgaagttgggcatacccaacctattcctattgtactc 23848312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 4151915 - 4151814
Alignment:
Q  7 agaaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactctcctctaatgaaat 106  Q
    ||||||||||||||||| | |||||||||||||||| || ||||||| || || |||| |||  |||||||||| ||  ||| ||||||  |||||||||    
T  4151915 agaaagaaaagggggaccaaaccaaaaccttttcaataggtgttaaacctgaaattggacatatccaacctatttctcatgtgctctcccttaatgaaat 4151816  T
Q  107 ca 108  Q
    ||    
T  4151815 ca 4151814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 38623020 - 38622938
Alignment:
Q  9 aaagaaaagggggactataccaaaaccttttcaaaagatgttaaatctaaagttgggcattcccaacctattcctagtgtactc 92  Q
    ||||||||||||| | | |||||| |||||||||||| |   | |||||||||||| ||||||||| ||||||||| |||||||    
T  38623020 aaagaaaaggggggccaaaccaaa-ccttttcaaaaggttacatatctaaagttggacattcccaatctattcctattgtactc 38622938  T

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Target: chr5; HSP #5
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 113
Target Start/End: Complemental strand, 21747556 - 21747529
Alignment:
Q  86 tgtactctcctctaatgaaatcaggagt 113  Q
    ||||||||||||||||||||||||||||    
T  21747556 tgtactctcctctaatgaaatcaggagt 21747529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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