View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1376-INSERTION-3 (Length: 230)
Name: NF1376-INSERTION-3
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376-INSERTION-3 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 7958959 - 7958798
Alignment:
| Q |
10 |
gagggacaaagagattgtatgccggaagcgaatgaattactgaaaatgcgaaaaa-ctatgacaaatatttatgaacaaagaacaggcttctcaaactta |
108 |
Q |
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| T |
7958959 |
gagggacaaggagattgtatgctggaagcaaatgaattactgaaaatgcgaaaaaactatgacaaatatttatgcacaaagaacaggcttctcaaacttc |
7958860 |
T |
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| Q |
109 |
aaaaataaa-----ataatattcattttaactaacaaatgtttgattatatgatataaaatg |
165 |
Q |
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| T |
7958859 |
aaaaataaaataaaataatattcattttaactaacaaatgtttgattatatgatataaaatg |
7958798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 7958811 - 7958762
Alignment:
| Q |
181 |
tatgatataaaatgctcggttctaaaaatggctgaattgacaatttgtgt |
230 |
Q |
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| T |
7958811 |
tatgatataaaatgctcggttctaaaaatggctgaattgacaatttgtgt |
7958762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 18332362 - 18332286
Alignment:
| Q |
20 |
gagattgtatgccggaagcgaatgaattactgaaaatgcgaaaaactatgacaaatatttatgaacaaagaacaggc |
96 |
Q |
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| T |
18332362 |
gagaatgtatgctggaagcggaggaattactgaaaatgcgaaaaactatcacaaatatttatgcacaaagaacaggc |
18332286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 29800305 - 29800229
Alignment:
| Q |
20 |
gagattgtatgccggaagcgaatgaattactgaaaatgcgaaaaactatgacaaatatttatgaacaaagaacaggc |
96 |
Q |
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| T |
29800305 |
gagaatgtatgctggaagcggaggaattactgaaaatgcgaaaaactattacaaatatttatgcacaaagaacaggc |
29800229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 2399124 - 2399197
Alignment:
| Q |
20 |
gagattgtatgccggaagcgaatgaattactgaaaatgcg--aaaaactatgacaaatatttatgaacaaagaa |
91 |
Q |
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| T |
2399124 |
gagaatgtatgcttgaagcgaatgaattactgaaaatgcgaaaaaaactatatcaaatatttatgtacaaagaa |
2399197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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