View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1376-INSERTION-5 (Length: 520)
Name: NF1376-INSERTION-5
Description: NF1376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1376-INSERTION-5 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 8 - 520
Target Start/End: Complemental strand, 39263515 - 39263002
Alignment:
| Q |
8 |
ctaggatctcaagaagtgatgattttccagctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattcttgagtacatg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39263515 |
ctaggatctcaagaagtgatgattttccagctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattcttgagtacatg |
39263416 |
T |
|
| Q |
108 |
cctaactccactgcaacctttttcaacttcttctgtttcttgaccattagtatttactagttgtggagatttgctgaagattttaaaagggtgttctgct |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39263415 |
cctaactccactgcaacctttttcaacttcttctgtttcttgaacattagtatttactagttgtggagatttgctgaagattttaaaagggtgttctgct |
39263316 |
T |
|
| Q |
208 |
ttgtttgtgtggattttgtagtttatgccaatggcttcaacctcacagccctgcatcttcatttgttgcaaaggttgttgttttttgatttaaactctt- |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39263315 |
ttgtttgtgtggattttgtagtttatgccaatgacttcaacctcacagccctgcatcttcatttgttgcaaaggttgttgttttttgatttaaactcttt |
39263216 |
T |
|
| Q |
307 |
ttttctcactgattcctctactctcttctagttgtcaaacccattatttgattcttttcttctcctctctttgttgttatctctgttttaaatgaaagat |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
39263215 |
ttttctcactgattcctctactctcttctagttgtcaaacccattatttgattcttttcttctcctctctttgttgttacctctgttttaaatgaaagat |
39263116 |
T |
|
| Q |
407 |
tttggcctcagctactgacagtgaaacaatgggtggtttgcaattacattgaggccctcgaagtttgtatacaaaggttcacgtgcacttgttgctgttt |
506 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39263115 |
tttggcctcagctactgacattgaaacaatgggtggtttgcaattacattgaggccctcgaagtttgtatacaaaggttcacgtgcacttcttgctgttt |
39263016 |
T |
|
| Q |
507 |
ctctaccaatttta |
520 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
39263015 |
ctctaccaatttta |
39263002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 44067234 - 44067129
Alignment:
| Q |
13 |
atctcaagaagtgatgattttccagctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattcttgagtacatgcctaa |
112 |
Q |
| |
|
|||||||| | |||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| | || | |||| |||||| |||||| ||| |
|
|
| T |
44067234 |
atctcaagcaatgatgattttcctgctccacttggcccaacaattgcaagaatttcacatggcttggctatgcaattaacatccttgaggacatgcttaa |
44067135 |
T |
|
| Q |
113 |
ctccac |
118 |
Q |
| |
|
|||||| |
|
|
| T |
44067134 |
ctccac |
44067129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University