View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13760_high_1 (Length: 638)
Name: NF13760_high_1
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 244 - 632
Target Start/End: Original strand, 38677224 - 38677610
Alignment:
| Q |
244 |
aatgtgtgatcgaaaggatctaaaatgaggctcgttctcaatttctcataatttgaatggttcaaattgttagtcatatcttccagccctgatacaaagt |
343 |
Q |
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| T |
38677224 |
aatgtgtgatcgaaaggatctaaaatgaggctcgttctcaatttctcataatttgaatggttcaaattgttagtcatatcttccagccctgatacaaagt |
38677323 |
T |
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| Q |
344 |
tattgactaaattgaataatttttcaaattttttgaataatcaaaataaattaacccattgaacaaaatgtcacagaacactgatatcagaatcaaaaga |
443 |
Q |
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| T |
38677324 |
tattgactaaattgaataatttttcaaattttttgaataatcaaaataaattaacccattgaacaaaatgtcacagaacactgatatcagaatcaaaaga |
38677423 |
T |
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| Q |
444 |
taaaaagtatcatcaagaaattaaaatacaacagtatgcaattcgtttacaatacccccaaaattgaagtgaacaatagcggcaagaaaggggattgcat |
543 |
Q |
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| T |
38677424 |
taaaaagtatcatcaagaaattaaaatacaacagtatgc--ttcatttacaatacccccaaaattgaagtgaacaatagccgcaagaaaggggattgcat |
38677521 |
T |
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| Q |
544 |
tgtggttttttaaaaatccttgcttaacttgcaactcaagaaatatataataatccgattaagagaaaatcaaagtgttttagaataat |
632 |
Q |
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| T |
38677522 |
tgtggttttttaaaaatccttgcttaacttgcaactcaagaaatatataataatccgattaagagaaaatcaaagtgttttagaataat |
38677610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 38675954 - 38676006
Alignment:
| Q |
49 |
ttaatgaaatgatctggatgatttctattattacaaaatcaaatattcacggt |
101 |
Q |
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| T |
38675954 |
ttaatgaaatgatctggatgatttctattattacaaaatcaaatattcacggt |
38676006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 38677139 - 38677179
Alignment:
| Q |
158 |
gttacaagaataaaccaagtacgataaaatctttacaattt |
198 |
Q |
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| T |
38677139 |
gttacaagaataaaccaagtacgatcaaatctttacaattt |
38677179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 365
Target Start/End: Original strand, 38673466 - 38673509
Alignment:
| Q |
322 |
tcttccagccctgatacaaagttattgactaaattgaataattt |
365 |
Q |
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| T |
38673466 |
tcttccagcccagatacaaagttattgactacaatgaataattt |
38673509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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