View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13760_high_13 (Length: 275)
Name: NF13760_high_13
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 107274 - 107549
Alignment:
| Q |
1 |
ttcatatttttaatgacattttaggagcgactgaatagatgttctgaatcattnnnnnnnntatatgtctaagttatcctaaaagaattttgtatttccc |
100 |
Q |
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| T |
107274 |
ttcatatttttaatgacattttaggagcgactgaatagatgttctgaatcattaaaaaaa--atatgtctaagttatcctaaaagaattctgtatttccc |
107371 |
T |
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| Q |
101 |
gctgaaaactc---tttttaagtaaaaagccatttttgaataaaaaagaaagtaaatagtcatttgnnnnnnnnaatgaaaaagattatttgattcttat |
197 |
Q |
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| T |
107372 |
gctgaaaactcatttttttaagtaaaaagccatttttgaataaaaaagaaagtaaatagtcatttgttttttttaatgaaaaagattatttgattcttat |
107471 |
T |
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| Q |
198 |
attaggatgaagtaaaatgaaagttgacttaattgataagaagttgactcatcaataagttggattcaacttctgcac |
275 |
Q |
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| T |
107472 |
attaggatgtagtaaaatgaaagttgacttaattgataagaagttgactcatcaataagttggattcaacttctgcac |
107549 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 41624719 - 41624756
Alignment:
| Q |
213 |
aatgaaagttgacttaattgataagaagttgactcatc |
250 |
Q |
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| T |
41624719 |
aatgaaggttgactcaattgataagaagttgactcatc |
41624756 |
T |
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