View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13760_high_17 (Length: 257)

Name: NF13760_high_17
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13760_high_17
NF13760_high_17
[»] chr3 (2 HSPs)
chr3 (39-241)||(50219052-50219254)
chr3 (1-38)||(50939496-50939534)
[»] chr5 (2 HSPs)
chr5 (1-38)||(7670728-7670765)
chr5 (1-38)||(27923885-27923923)
[»] chr4 (1 HSPs)
chr4 (1-38)||(38352517-38352554)
[»] chr8 (1 HSPs)
chr8 (1-39)||(42600583-42600622)
[»] chr2 (1 HSPs)
chr2 (1-38)||(27507003-27507041)
[»] chr1 (3 HSPs)
chr1 (1-38)||(13913744-13913782)
chr1 (1-38)||(40502052-40502090)
chr1 (1-33)||(19955537-19955569)
[»] chr7 (2 HSPs)
chr7 (1-38)||(20091542-20091579)
chr7 (1-40)||(19691895-19691935)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 39 - 241
Target Start/End: Complemental strand, 50219254 - 50219052
Alignment:
Q  39 aacactagttccaacatgtcgttttctgttagtaatgtcgtgtctagtaatccttcatgcttaatgaactgataccaatcatacttaaagcaatccaact 138  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50219254 aacactagttccaacatgtcgtgttctgttagtaatgtcgtgtctagtagtgcttcatgcttaatgaactgatgccaatcatacttaaagcaatccaact 50219155  T
Q  139 ctgccaaagttttcatacaaattcacaataaatcatcaaatcagtatgatgtaatgtaacaacccacaataatctagcttctcaatgaaattagataaat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50219154 ctgccaaagttttcatacaaattcacaataaatcatcaaatcagtatgatgtaatgtaacaacccacaataatctagcttctcaatgaaattagataaat 50219055  T
Q  239 tct 241  Q
    |||    
T  50219054 tct 50219052  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50939496 - 50939534
Alignment:
Q  1 ctctgttgagctgtttgcacc-cctcagggacgggcctg 38  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  50939496 ctctgttgagctgtttgcacctcctcagggacgggcctg 50939534  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7670765 - 7670728
Alignment:
Q  1 ctctgttgagctgtttgcacccctcagggacgggcctg 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  7670765 ctctgttgagctgtttgcacccctcagggccgggcctg 7670728  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 27923923 - 27923885
Alignment:
Q  1 ctctgttgagctgtttgca-cccctcagggacgggcctg 38  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  27923923 ctctgttgagctgtttgcaccccctcagggacgggcctg 27923885  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 38352517 - 38352554
Alignment:
Q  1 ctctgttgagctgtttgcacccctcagggacgggcctg 38  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  38352517 ctctgttgagctgtttgcacccctcagggccgggcctg 38352554  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42600622 - 42600583
Alignment:
Q  1 ctctgttgagctgtttgca-cccctcagggacgggcctga 39  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  42600622 ctctgttgagctgtttgcaccccctcagggacgggcctga 42600583  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27507003 - 27507041
Alignment:
Q  1 ctctgttgagctgtttgca-cccctcagggacgggcctg 38  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  27507003 ctctgttgagctgtttgcaccccctcagggacgggcctg 27507041  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13913744 - 13913782
Alignment:
Q  1 ctctgttgagctgtttgca-cccctcagggacgggcctg 38  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  13913744 ctctgttgagctgtttgcaccccctcagggacgggcctg 13913782  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40502052 - 40502090
Alignment:
Q  1 ctctgttgagctgtttgca-cccctcagggacgggcctg 38  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  40502052 ctctgttgagctgtttgcaccccctcagggacgggcctg 40502090  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19955569 - 19955537
Alignment:
Q  1 ctctgttgagctgtttgcacccctcagggacgg 33  Q
    |||||||||||||||||||||||||| ||||||    
T  19955569 ctctgttgagctgtttgcacccctcaaggacgg 19955537  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20091542 - 20091579
Alignment:
Q  1 ctctgttgagctgtttgcacccctcagggacgggcctg 38  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  20091542 ctctattgagctgtttgcaccccccagggacgggcctg 20091579  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19691935 - 19691895
Alignment:
Q  1 ctctgttgagctgtttgca-cccctcagggacgggcctgaa 40  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  19691935 ctctgttgagctgtttgcaccccctcagggtcgggcctgaa 19691895  T

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