View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13760_high_18 (Length: 257)
Name: NF13760_high_18
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_high_18 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 257
Target Start/End: Complemental strand, 1886217 - 1885977
Alignment:
| Q |
17 |
aaagtgtactattttattacaggaagataataattttgtcttctagagttaagatcattggcttagaatggcactattttgggataaatatataaggggc |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1886217 |
aaagtgtactattttattaaaggaagataataattttgtcttctagagttaagatcattggcttagaatgacactattttgggataaatatataaggggc |
1886118 |
T |
|
| Q |
117 |
atttcaaatttttcatcataatataggatagtttagacaataatataatgagtagtagtaatttatctttgttccactacttgctcttttgtcatgttaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1886117 |
atttcaaatttttcatcataatataggataggttagacaataatataatgagtagtagtaatttatctttgttccactacttgctcttttgtcatgttat |
1886018 |
T |
|
| Q |
217 |
attttttgtagcaactcttctatattatttacttttatttc |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1886017 |
attttttgtagcaactcttctatattatttacttttatttc |
1885977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 1876527 - 1876286
Alignment:
| Q |
16 |
caaagtgtactattttattacaggaagataataattttgtcttctagagttaagatcattggcttagaatggcactattttgggataaatatataagggg |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1876527 |
caaagtgtactattttattaaaggaagataataattttgtcttctagagttaagatcattggcttagaatgacactattttgggataaatatataagggg |
1876428 |
T |
|
| Q |
116 |
catttcaaatttttcatcataatataggatagtttagacaataatataatgagtagtagtaatttatctttgttccactacttgctcttttgtcatgtta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
1876427 |
catttcaaatttttcatcataatataggataggttagacaataatataataagtagtagtaatttatctttgttccacaacttgctcttttgtcatttta |
1876328 |
T |
|
| Q |
216 |
aattttttgtagcaactcttctatattatttacttttatttc |
257 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1876327 |
tattttttgtagcaactcttctatcttatttacttttatttc |
1876286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University