View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13760_high_20 (Length: 230)
Name: NF13760_high_20
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_high_20 |
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| [»] scaffold0405 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 8028281 - 8028479
Alignment:
| Q |
16 |
tcagcaaacaacccaaaccaggggcttaaatcctcgcaaatgaaaatccataaagaaagaaactaagctcaaattaccaaactaaaacacggtttcacaa |
115 |
Q |
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| T |
8028281 |
tcagcaaacaacccaaaccaggggcttaaatcctcgcaaatgaaaatccataaagaaagaaactaagctcaaattaccaaactaaaacacggtttcacaa |
8028380 |
T |
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| Q |
116 |
acataaataaatgttcacacctgcaacaaagtaagttgtgcagaaagtgtagtggcttcagtgtgcagagtctgaaccttgtgttcgagctccgaaatg |
214 |
Q |
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| T |
8028381 |
acataaataaatgttcacacctgcaacaaagtaagttttgcagaaaatatagtggcttcagtgtgcagagtctgaaccttgtgttctagctccgaaatg |
8028479 |
T |
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Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 27350070 - 27349929
Alignment:
| Q |
71 |
aaagaaactaagctcaaattaccaaactaaaacacggtttcacaaacataaataaatgttcacacctgcaacaaagtaagttgtgcagaaagtgtagtgg |
170 |
Q |
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| T |
27350070 |
aaagaaactaagctgaaattaccaaactaaaacatgcattcacaaacataaataa-tgttcccacctgcaacaaagtaagttgtgcagaaagtgtagtgg |
27349972 |
T |
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| Q |
171 |
cttcagtgtgcagagtctgaaccttgtgttcgagctccgaaat |
213 |
Q |
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| T |
27349971 |
cttcagtctgcagagtctgaaccttgtgttctagctccgaaat |
27349929 |
T |
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Target: scaffold0405 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0405
Description:
Target: scaffold0405; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 172
Target Start/End: Original strand, 14328 - 14429
Alignment:
| Q |
71 |
aaagaaactaagctcaaattaccaaactaaaacacggtttcacaaacataaataaatgttcacacctgcaacaaagtaagttgtgcagaaagtgtagtgg |
170 |
Q |
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| T |
14328 |
aaagaaactaagctcaaattaccaaacaaaaacacggtttcacaaacataaataaatgttcccacctgcaacaaagtaagttgggcagaaagtgtagtgg |
14427 |
T |
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| Q |
171 |
ct |
172 |
Q |
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|| |
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| T |
14428 |
ct |
14429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 770611 - 770558
Alignment:
| Q |
16 |
tcagcaaacaacccaaaccaggggcttaaatcctcgcaaatgaaaatccataaa |
69 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
770611 |
tcagcaaaaaacccaaaccaggggcttaaattctcgcaaatgcaaatccataaa |
770558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 51389453 - 51389497
Alignment:
| Q |
25 |
aacccaaaccaggggcttaaatcctcgcaaatgaaaatccataaa |
69 |
Q |
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| T |
51389453 |
aacccaaaccaggggcttaaattctcgcaaatgcaaatccataaa |
51389497 |
T |
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