View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13760_high_4 (Length: 454)

Name: NF13760_high_4
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13760_high_4
NF13760_high_4
[»] chr8 (6 HSPs)
chr8 (40-439)||(44306588-44306987)
chr8 (43-439)||(43896137-43896533)
chr8 (40-439)||(44301480-44301881)
chr8 (45-426)||(44312372-44312753)
chr8 (54-104)||(43895619-43895669)
chr8 (54-104)||(44306043-44306093)
[»] chr4 (1 HSPs)
chr4 (43-433)||(18701741-18702135)
[»] chr3 (1 HSPs)
chr3 (43-433)||(4084249-4084645)
[»] chr6 (1 HSPs)
chr6 (53-433)||(8158829-8159230)
[»] chr5 (2 HSPs)
chr5 (202-280)||(35856724-35856802)
chr5 (305-417)||(35856591-35856703)
[»] chr7 (1 HSPs)
chr7 (56-99)||(15040305-15040348)
[»] chr2 (1 HSPs)
chr2 (212-268)||(10541388-10541444)


Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 40 - 439
Target Start/End: Original strand, 44306588 - 44306987
Alignment:
Q  40 agtaggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca 139  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306588 agtaggaacatcggcagaagtcattgtatatctaacagacccatcagtaaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca 44306687  T
Q  140 gcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat 239  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306688 gcatgagcttcatcaacatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat 44306787  T
Q  240 ccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatact 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44306788 ccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatact 44306887  T
Q  340 tccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctccctaagt 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44306888 tccagacaattcaattttctcaccattcttatttagatcaagagcataattactaacatcgattggacttggcaaatacctaattacaccctccctaagt 44306987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 43 - 439
Target Start/End: Original strand, 43896137 - 43896533
Alignment:
Q  43 aggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagca 142  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||  |||| ||| |||||||||    
T  43896137 aggaacatcggcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaatagcatctaacacaataataatctctccagca 43896236  T
Q  143 tgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatcct 242  Q
    |||||||||||| | | |||||||| |||||||||||||||| ||||   | ||||||||||||||| |||||||||||||||||||||||||||| |||    
T  43896237 tgagcttcatcaacttcctcaatcttatcatcatgtctcttaaacaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatcaccct 43896336  T
Q  243 tcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttcc 342  Q
    |||||||||||||||||||||||||||||||||||| |||  ||    |  |||    |||||||||| ||||||||||||||||||||||||| |||||    
T  43896337 tcttaataacaccctgatagattcttagataagttactaatccatcattcctaatcacatttgtgaaaacctttgcaacaaatggcgcatcaatgcttcc 43896436  T
Q  343 agacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctccctaagt 439  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||| |||||    
T  43896437 agacaattcaactttctcaccattcctattttgatcaagagcataattactaacatcgattggacccggcaaatacctaattacaccctccataagt 43896533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 40 - 439
Target Start/End: Original strand, 44301480 - 44301881
Alignment:
Q  40 agtaggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca 139  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |  | | ||||  ||||||||||||||     
T  44301480 agtaggaacatcggcagaagacattgtatatctaacagacccatcagtaaaagtatctccagatttaagaacaatagctaacacaataacaatttctccg 44301579  T
Q  140 gcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcat 239  Q
    ||||||||||||||| || |||||||| ||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||||||||||||||     
T  44301580 gcatgagcttcatcaacaaactcaatcacatcatcatgtctcttagacaagctataaatctgaatcttctcaccagtgttaacatttgtaataaaatcac 44301679  T
Q  240 ccttcttaataacaccctgatagattcttagataagttaataag------tcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatc 333  Q
    ||||||| |||||||||||||||||||||||| ||||||| |||      |||||||  |  |    |||||||||| ||||||| ||||||||||||||    
T  44301680 ccttcttgataacaccctgatagattcttagacaagttaa-aagaatccatcactccaataca---aatttgtgaaaacctttgctacaaatggcgcatc 44301775  T
Q  334 aatacttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctcc 433  Q
    || ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  44301776 aacacttccagacaattcaactttctcaccattcttattttgatcaagagcataattactaacatcgattggactcggcaaatacctaattacatcctcc 44301875  T
Q  434 ctaagt 439  Q
     |||||    
T  44301876 ataagt 44301881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 45 - 426
Target Start/End: Original strand, 44312372 - 44312753
Alignment:
Q  45 gaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatg 144  Q
    ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||| |||| | ||||  | ||||||||||||||||||    
T  44312372 gaacatcggcagaagtcattatatatctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaacacaaaaacaatttctccagcatg 44312471  T
Q  145 agcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatcatccttc 244  Q
    |||||||||| | | || ||||| | ||| ||||||||||| |||   | |||||| |||||||| |||||||||||| ||||||||||||||| |||||    
T  44312472 agcttcatcaacttccttaatcttaccataatgtctcttacccaaacaaggaatcttaatcttcttaccagtgttaacgtttgtaataaaatcacccttc 44312571  T
Q  245 ttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatacttccag 344  Q
    ||||||||||||||||||||||||||||||||||||||||  ||  |  ||    ||||||||||| ||||||| ||||||||| |||||| ||||||||    
T  44312572 ttaataacaccctgatagattcttagataagttaataagtacctaatcctatacatatttgtgaaaacctttgctacaaatggctcatcaacacttccag 44312671  T
Q  345 acaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattac 426  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44312672 acaattcaactttctcaccattcttattttgatcaagagcataattactaacatcgattggacttggcaaatacctaattac 44312753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 43895619 - 43895669
Alignment:
Q  54 cagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatt 104  Q
    |||| ||||||| ||||||||||||||||||||  ||||||||||||||||    
T  43895619 cagaggtcattgaatatctaacagacccatcagcaaaagtatctccagatt 43895669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 44306043 - 44306093
Alignment:
Q  54 cagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatt 104  Q
    |||| ||||||| ||||||||| ||||||||||  ||||||||||||||||    
T  44306043 cagaggtcattgaatatctaacggacccatcagcaaaagtatctccagatt 44306093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 43 - 433
Target Start/End: Original strand, 18701741 - 18702135
Alignment:
Q  43 aggaacatctgcagaagtcattgtatatctaacagacccat---cagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctcca 139  Q
    ||||||||| |||||||||||||||||||||||||||||||   | || |||||||||||||||| |||| ||||||| || |  | |||||||||||||    
T  18701741 aggaacatcagcagaagtcattgtatatctaacagacccattggcggtaaaagtatctccagattcaagatgagcatcaaaaacaaaaacaatttctcca 18701840  T
Q  140 gcatgagcttcatcagcatactcaatctcatcatcat-gtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaatca 238  Q
    ||||||||||||||| | | ||| || | || | | | ||||||| | |||   | ||||||||||||||| ||||||||||||||||||||||||||||    
T  18701841 gcatgagcttcatcaacttcctcgattttattaacttcgtctcttgcccaaacgaggaatctgaatcttcttaccagtgttaacatttgtaataaaatca 18701940  T
Q  239 tccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaatac 338  Q
     |||||||||||||||||||||||||||||||||||||||||  |  |  ||| | | |   |||||  |||||||||||||||||||| ||||||||||    
T  18701941 cccttcttaataacaccctgatagattcttagataagttaatttgaaatacctctcatgccaatttgcaaaagcctttgcaacaaatggtgcatcaatac 18702040  T
Q  339 ttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctcc 433  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18702041 ttccagacaattcaactttctcaccattcttatttagatcaagagcataattactaacatcgattggacttggcaaatacctaattacaccctcc 18702135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 43 - 433
Target Start/End: Original strand, 4084249 - 4084645
Alignment:
Q  43 aggaacatctgcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaac---aaca---taacaatttct 136  Q
    ||||||||| |||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||| |||||| |||   ||||   |||||| ||||    
T  4084249 aggaacatcggcagaagtcattgtatatctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttct 4084348  T
Q  137 ccagcatgagcttcatcagcatactcaatctcatcatcatgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaataaaat 236  Q
    |||||||||||||||||| |   || ||||  || ||||||||||||| ||||   | |||||| |||||||| ||| ||||||||||||||||||||||    
T  4084349 ccagcatgagcttcatcaactgccttaatcgtattatcatgtctcttaaacaaacgaggaatcttaatcttcttaccggtgttaacatttgtaataaaat 4084448  T
Q  237 catccttcttaataacaccctgatagattcttagataagttaataagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggcgcatcaat 336  Q
    || ||||||| |||||||||||||||||||||||||||||||||     |  |    || |   || ||||||||||||| |||||||||| ||||||||    
T  4084449 cacccttcttgataacaccctgatagattcttagataagttaattttaaaaacggcctatgccaatatgtgaaagcctttccaacaaatggtgcatcaat 4084548  T
Q  337 acttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacaccctcc 433  Q
    ||||||| ||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  4084549 acttccaaacaattcaactttctcaccattcctattttgatcatgagcataattactaacatcgattggactcggcaaatacctaattacaccctcc 4084645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 53 - 433
Target Start/End: Complemental strand, 8159230 - 8158829
Alignment:
Q  53 gcagaagtcattgtatatctaacagacccatcagtgaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatgagcttcat 152  Q
    |||||||||||| ||||||||||||||||||| || |||||||||||||||| |||| ||||||| ||||  | ||||||||||||||||||||||||||    
T  8159230 gcagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcat 8159131  T
Q  153 ------------------cagcatactcaatctcatcat---catgtctcttacacaaggtaagaatctgaatcttctcaccagtgttaacatttgtaat 231  Q
                      || | | |||| |||||||||   || ||||||||| |||   | |||||| |||||||| |||||||||||||||||||||    
T  8159130 caacttccttgattttatcaacttcctcactctcatcatgttcacgtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacatttgtaat 8159031  T
Q  232 aaaatcatccttcttaataacaccctgatagattcttagataagttaat---aagtcactcctgttaagattatttgtgaaagcctttgcaacaaatggc 328  Q
    ||||||| |||||||||||||||||||||| |||||||| |||||||||   || |   |||| | |  |  | ||  |||||||||||||||||||||     
T  8159030 aaaatcacccttcttaataacaccctgataaattcttaggtaagttaattttaaatacatcctat-acca--agttacgaaagcctttgcaacaaatgga 8158934  T
Q  329 gcatcaatacttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattggacttggcaaatacctaattacac 428  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  8158933 gcatcaatacttccagacaattcaactttctcgccattcctattttgatcaagagcataattactaacatcgattggactcggcaaatacctaattacac 8158834  T
Q  429 cctcc 433  Q
    |||||    
T  8158833 cctcc 8158829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 35856802 - 35856724
Alignment:
Q  202 aatcttctcaccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattcttagataagttaat 280  Q
    |||||||||||||||||||||||| |||||||||||  | ||  ||||||| |||||||||||||||||||| ||||||    
T  35856802 aatcttctcaccagtgttaacattagtaataaaatccccttttctaataacgccctgatagattcttagatatgttaat 35856724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 417
Target Start/End: Complemental strand, 35856703 - 35856591
Alignment:
Q  305 gtgaaagcctttgcaacaaatggcgcatcaatacttccagacaattcaattttctcaccattcttatttagatcaagagcataattaccaacatcgattg 404  Q
    |||||||||  ||| ||||| ||| |||||||||||||||||||||| | |||||| |||||| ||  | ||||||||||||||||||  | ||| ||||    
T  35856703 gtgaaagccaatgcgacaaacggcccatcaatacttccagacaattctactttctctccattcctagcttgatcaagagcataattactcaaatcaattg 35856604  T
Q  405 gacttggcaaata 417  Q
    |||| ||||||||    
T  35856603 gactcggcaaata 35856591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 15040305 - 15040348
Alignment:
Q  56 gaagtcattgtatatctaacagacccatcagtgaaagtatctcc 99  Q
    ||||||||||||||| |||||||||||||||| |||||||||||    
T  15040305 gaagtcattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 268
Target Start/End: Original strand, 10541388 - 10541444
Alignment:
Q  212 ccagtgttaacatttgtaataaaatcatccttcttaataacaccctgatagattctt 268  Q
    ||||||||| ||||||||||||||||  |||||  ||| ||||||| ||||||||||    
T  10541388 ccagtgttatcatttgtaataaaatctcccttccgaatgacaccctcatagattctt 10541444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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