View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13760_low_12 (Length: 303)
Name: NF13760_low_12
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_low_12 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8028041 - 8027802
Alignment:
| Q |
1 |
tgggttggctatgttttctgtttaggatttttctgaattacttgagtttactaacaatcaatgatttctttct----------aggactagaaagaactc |
90 |
Q |
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| T |
8028041 |
tgggttgactatgttttctgtgtaggatttttctgaattacttgagtttactaacaatcaatgatttctttctgctactatctaggactagaaagaactc |
8027942 |
T |
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| Q |
91 |
ttactcatatatccaattatatccaactgtattgaacaatagcaaaccatgacacaaggtctgtaacattcattattttgtccatatggagttgaggttt |
190 |
Q |
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| T |
8027941 |
ttactcatatatccaattatatccaattgtattgaacaatagcaaaccatgacacaaggtctgtaacattcattattttgtccatatgaagttgagtttt |
8027842 |
T |
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| Q |
191 |
tatgtattcaatttatgcttagatctgcttctgttatgat |
230 |
Q |
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| T |
8027841 |
tatgtatccaattgatgcttagatctgcttctattatgat |
8027802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 8027440 - 8027376
Alignment:
| Q |
227 |
tgatttcaaccgtaattataatatgatatactcactaataaatgattttataaattgcacaggtt |
291 |
Q |
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| T |
8027440 |
tgatttcaacggtaattataatatgatatactcactaatagatgattttacaaattgcacaggtt |
8027376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 770920 - 771124
Alignment:
| Q |
9 |
ctatgttttctgtttaggatttttctgaattacttgagtttactaacaat---caatgatttctttct----------aggactagaaagaactcttact |
95 |
Q |
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| T |
770920 |
ctatgttttctgtttatatattttctgaaatacttaagtttactaacaatgctcaatgatttctttctgctactatctaggaccagaaataacttttaat |
771019 |
T |
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| Q |
96 |
catatatccaattatatccaactgtattgaacaatagcaaaccatgacacaaggtctgtaacattcattattttgtccatatggagttgaggttttatgt |
195 |
Q |
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| T |
771020 |
catatatccaattatatccaattgtactgaacaatagcaaaccatgacacaaggtctgcaacattg----ttttgtccatatgaagttgagttattatgt |
771115 |
T |
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| Q |
196 |
attcaattt |
204 |
Q |
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| T |
771116 |
atccaattt |
771124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 203
Target Start/End: Complemental strand, 43043769 - 43043678
Alignment:
| Q |
108 |
tatatccaactgtattgaacaatagcaaaccatgacacaaggtctgtaacattcattattttgtccatatggagttgaggttttatgtattcaatt |
203 |
Q |
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| T |
43043769 |
tatatcctactgtactgaacaacagctcaccatgacacaaggtctgcaa----cattattttgtccatatgaaattgagtttttatgtatccaatt |
43043678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 24125069 - 24125113
Alignment:
| Q |
227 |
tgatttcaaccgtaattataatatgatatactcactaataaatga |
271 |
Q |
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| T |
24125069 |
tgatttcaaccgtaattataatattatatactcactaatagatga |
24125113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 203
Target Start/End: Original strand, 25434821 - 25434912
Alignment:
| Q |
108 |
tatatccaactgtattgaacaatagcaaaccatgacacaaggtctgtaacattcattattttgtccatatggagttgaggttttatgtattcaatt |
203 |
Q |
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| T |
25434821 |
tatatccaattgtattgaacaacaactcaccatgacacaagctctgcaacatt----attttgtccatatgaaattgagtttttatgtatccaatt |
25434912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 68594 - 68558
Alignment:
| Q |
235 |
accgtaattataatatgatatactcactaataaatga |
271 |
Q |
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| T |
68594 |
accgtaattataatatgatatacccactaatagatga |
68558 |
T |
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