View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13760_low_17 (Length: 260)
Name: NF13760_low_17
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 138 - 242
Target Start/End: Complemental strand, 36605917 - 36605813
Alignment:
| Q |
138 |
ctaattcacaaacgactgaactgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttg |
237 |
Q |
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| T |
36605917 |
ctaattgacaaacgactgaactgaatctcaatcaaatagtaaaacatcattttgattctacaatctattagttttcattcctcaaattttcccccatttg |
36605818 |
T |
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| Q |
238 |
cctat |
242 |
Q |
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||||| |
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| T |
36605817 |
cctat |
36605813 |
T |
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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 36606037 - 36605979
Alignment:
| Q |
18 |
attttatgtagagttggggcattttatgtacgacaaaaatgttggagaagtgttaatgc |
76 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |
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| T |
36606037 |
attttatgtagagttggggcattttctgtatgacaaaaatgttgaagaagtgttaatgc |
36605979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 242
Target Start/End: Original strand, 32649626 - 32649723
Alignment:
| Q |
145 |
acaaacgactgaactgaatctcaatcaaatagtggaacatcattttgattctacaatctattagttttcattcctcaaa-ttttcccccatttgcctat |
242 |
Q |
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||||| || |||||||||| ||||||||| || ||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
32649626 |
acaaaagaatgaactgaatgtcaatcaaacag-ggaacataattttcattctataatctattagttttcattcctcaaatttttcccacatttgcctat |
32649723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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