View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13760_low_20 (Length: 241)

Name: NF13760_low_20
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13760_low_20
NF13760_low_20
[»] chr1 (8 HSPs)
chr1 (1-223)||(26532738-26532960)
chr1 (15-76)||(15882690-15882751)
chr1 (17-76)||(15880593-15880652)
chr1 (22-76)||(49197446-49197500)
chr1 (29-162)||(26532736-26532869)
chr1 (31-76)||(48597243-48597288)
chr1 (31-71)||(48591668-48591708)
chr1 (31-71)||(48601363-48601403)
[»] chr3 (1 HSPs)
chr3 (27-76)||(3717660-3717709)
[»] chr8 (7 HSPs)
chr8 (84-191)||(29610030-29610137)
chr8 (27-76)||(29610031-29610080)
chr8 (23-82)||(28074173-28074232)
chr8 (23-58)||(32465303-32465338)
chr8 (29-62)||(16973360-16973393)
chr8 (26-67)||(26810926-26810967)
chr8 (38-82)||(23546075-23546119)
[»] chr4 (3 HSPs)
chr4 (21-61)||(45910661-45910701)
chr4 (22-82)||(1797588-1797648)
chr4 (20-56)||(5449642-5449678)
[»] chr2 (3 HSPs)
chr2 (26-76)||(38277348-38277398)
chr2 (27-72)||(5854891-5854936)
chr2 (30-70)||(34443349-34443389)


Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 26532738 - 26532960
Alignment:
Q  1 caaaagatgggttaaattacttatgttgagttgacaccaatcaaaattatttatttgtcttccactatttatgttaaatatacataacataagtaatgaa 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||    
T  26532738 caaaagatgggttaagttacttatgttgagttgacaccaatcaaaattatttatttgtcttctactacttatgttaaatatacataacataaatagtgaa 26532837  T
Q  101 agataaatttataattttgatcgatgtcaactaagtatgactaactttacccaccttttgtttatgaataaatacaaatttgtctaattttaacgttgat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26532838 agataaattcataattttgatcgatgtcaactaagtatgactaactttacccaccttttgtttatgaataaatacaaatttgtctaattttaacgttgat 26532937  T
Q  201 gttgttggcacgatgaaccaatt 223  Q
    |||||||||||||||||||||||    
T  26532938 gttgttggcacgatgaaccaatt 26532960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 15882751 - 15882690
Alignment:
Q  15 aattacttatgttgagttgacaccaatcaaaattatttatttgtcttccactatttatgtta 76  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||||||| | |||||||||||    
T  15882751 aattagttatgctgagttgacaccaatcaaaatcatttatttgtcttctattatttatgtta 15882690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 15880652 - 15880593
Alignment:
Q  17 ttacttatgttgagttgacaccaatcaaaattatttatttgtcttccactatttatgtta 76  Q
    |||||||||| |||||||||||||||||||| ||| |||||||||  | |||||||||||    
T  15880652 ttacttatgtcgagttgacaccaatcaaaatcattcatttgtcttttaatatttatgtta 15880593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 49197500 - 49197446
Alignment:
Q  22 tatgttgagttgacaccaatcaaaattatttatttgtcttccactatttatgtta 76  Q
    ||||||| ||| |||||||||||||| || ||||| |||||||||||||||||||    
T  49197500 tatgttgggttcacaccaatcaaaatcatatatttatcttccactatttatgtta 49197446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 26532869 - 26532736
Alignment:
Q  29 agttgacaccaatcaaaattatttatttgtcttccactatttatgttaaatatacataacataagtaatgaaagataaatttataattttgatcgatgtc 128  Q
    |||||||| | |||||||||||  |||| |||| ||||||||||||||  ||||  ||||||||||| |  |||| ||||  ||||||||||| | ||||    
T  26532869 agttgacatcgatcaaaattatgaatttatctttcactatttatgttatgtatatttaacataagtagtagaagacaaataaataattttgattggtgtc 26532770  T
Q  129 aactaagtatgactaactttacccaccttttgtt 162  Q
    |||| |  || | |||||| ||||| ||||||||    
T  26532769 aactcaacataagtaacttaacccatcttttgtt 26532736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 48597288 - 48597243
Alignment:
Q  31 ttgacaccaatcaaaattatttatttgtcttccactatttatgtta 76  Q
    ||||||||||||||| |||||||||| | ||| |||||||||||||    
T  48597288 ttgacaccaatcaaatttatttatttattttctactatttatgtta 48597243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 48591708 - 48591668
Alignment:
Q  31 ttgacaccaatcaaaattatttatttgtcttccactattta 71  Q
    |||||||||||||||||||||||||| | ||| ||||||||    
T  48591708 ttgacaccaatcaaaattatttatttattttctactattta 48591668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 48601403 - 48601363
Alignment:
Q  31 ttgacaccaatcaaaattatttatttgtcttccactattta 71  Q
    |||||||||||||||||||||||||| | ||| ||||||||    
T  48601403 ttgacaccaatcaaaattatttatttattttctactattta 48601363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 3717660 - 3717709
Alignment:
Q  27 tgagttgacaccaatcaaaattatttatttgtcttccactatttatgtta 76  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  3717660 tgagttggcaccaatcaaaactattcatttgtcttccactatttatgtta 3717709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 29610030 - 29610137
Alignment:
Q  84 ataacataagtaatgaaagataaatttataattttgatcgatgtcaactaagtatgactaactttacccaccttttgtttatgaataaatacaaatttgt 183  Q
    |||||||||||||||||||| ||||  ||||||||||| |||||||||| || |||  ||| | ||| ||||||||||| || | ||||||  |||||      
T  29610030 ataacataagtaatgaaagacaaataaataattttgattgatgtcaactcagcatgtgtaattctactcaccttttgttgataagtaaataagaatttaa 29610129  T
Q  184 ctaatttt 191  Q
    ||||||||    
T  29610130 ctaatttt 29610137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 29610080 - 29610031
Alignment:
Q  27 tgagttgacaccaatcaaaattatttatttgtcttccactatttatgtta 76  Q
    |||||||||| |||||||||||||||||||||||| || || ||||||||    
T  29610080 tgagttgacatcaatcaaaattatttatttgtctttcattacttatgtta 29610031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 28074232 - 28074173
Alignment:
Q  23 atgttgagttgacaccaatcaaaattatttatttgtcttccactatttatgttaaatata 82  Q
    |||||||||||||| | || ||||| ||||||||||||| || ||||||||||| |||||    
T  28074232 atgttgagttgacaactataaaaatcatttatttgtctttcattatttatgttatatata 28074173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 32465338 - 32465303
Alignment:
Q  23 atgttgagttgacaccaatcaaaattatttatttgt 58  Q
    ||||||||||| ||||||||||||||||||||||||    
T  32465338 atgttgagttggcaccaatcaaaattatttatttgt 32465303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 16973360 - 16973393
Alignment:
Q  29 agttgacaccaatcaaaattatttatttgtcttc 62  Q
    ||||||||||||| ||||||||||||||||||||    
T  16973360 agttgacaccaatgaaaattatttatttgtcttc 16973393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 26810967 - 26810926
Alignment:
Q  26 ttgagttgacaccaatcaaaattatttatttgtcttccacta 67  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  26810967 ttgagttgacacaaattaaaactatttatttgtcttccacta 26810926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 23546075 - 23546119
Alignment:
Q  38 caatcaaaattatttatttgtcttccactatttatgttaaatata 82  Q
    ||||||||||||||||||||||||| | |||||||| || |||||    
T  23546075 caatcaaaattatttatttgtcttctattatttatgatatatata 23546119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 45910661 - 45910701
Alignment:
Q  21 ttatgttgagttgacaccaatcaaaattatttatttgtctt 61  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  45910661 ttatgttgagttgacgtcaatcaaaattatttatttgtctt 45910701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 1797648 - 1797588
Alignment:
Q  22 tatgttgagttgacaccaatcaaaattatttatttgtcttccactatttatgttaaatata 82  Q
    ||||||||||||| ||| |||||||| ||  |||||| ||| ||||||||||||| |||||    
T  1797648 tatgttgagttgatacctatcaaaatcatccatttgttttcaactatttatgttatatata 1797588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 5449678 - 5449642
Alignment:
Q  20 cttatgttgagttgacaccaatcaaaattatttattt 56  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  5449678 cttatgttgagttgacaccaatcaaaatcattcattt 5449642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 38277348 - 38277398
Alignment:
Q  26 ttgagttgacaccaatcaaaattatttatttgtcttccactatttatgtta 76  Q
    |||||||||||||||||||||| |  | |||||||| ||||||||||||||    
T  38277348 ttgagttgacaccaatcaaaatcagatgtttgtctttcactatttatgtta 38277398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 5854891 - 5854936
Alignment:
Q  27 tgagttgacaccaatcaaaattatttatttgtcttccactatttat 72  Q
    |||||||||||||||||||||  ||||||||||||  |||||||||    
T  5854891 tgagttgacaccaatcaaaatcgtttatttgtcttttactatttat 5854936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 34443389 - 34443349
Alignment:
Q  30 gttgacaccaatcaaaattatttatttgtcttccactattt 70  Q
    ||||| || ||||||||||||||| ||||||||||||||||    
T  34443389 gttgaaacaaatcaaaattatttacttgtcttccactattt 34443349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University