View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13760_low_3 (Length: 493)
Name: NF13760_low_3
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 45322882 - 45323360
Alignment:
| Q |
1 |
ttgatattgaataaataattgaatgattattaatgaagaagagaaaggtttatatacaaggacaaatgagaagcgtaacaaacatgactgctttactaac |
100 |
Q |
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| T |
45322882 |
ttgatattgaataaatacttgaatgattattaatgaagaagagaaaggtttatatacaaggacaaatgagaagcgtaacaaacatgactgctttactaac |
45322981 |
T |
|
| Q |
101 |
taacttaacaaacataaactatcatctaatatggaattcaaaatagcaagaattatctccagcaaatttaataacaccaactatattcttcgtcgttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45322982 |
taacttaacaaacataaactatcatctaatatggaattcaaaatagcaagaattatttccagcaaatttaataacaccaactatattcttcgtcgttggg |
45323081 |
T |
|
| Q |
201 |
ggaacatgactgcttagtttttaggattgacaggaaatgagatttgatagaaccagtaatttatactcaagtcttggacattgccagcaaaaatgtgatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45323082 |
ggaacatgactgcttagtttttaggattgacaggaaatgagatttgatagaaccagtaatttatactcaagtcttggacattgccagcaaaaatgtgatc |
45323181 |
T |
|
| Q |
301 |
tggcctc--aaagattcatgtgttgaatttcatggtgcacagcctacaacctctgaagccagagttacttgtgatatcagactccgattgtgaataagac |
398 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45323182 |
tggcctcaaaaagattcatgtgttgaatttcatggtgcacaacctacaacctctgaagccagagttacttgtgatatcagactccgattgtgaataagac |
45323281 |
T |
|
| Q |
399 |
gtttggaaaggtgttaagatttacttgtggctattcagttgtgttattctgtttctgcttttctaatcaagtttcttag |
477 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45323282 |
gtttggaaaggtgttaagatttacttgtggctattcagttgtgttattctgtttctgcttttctaatcaagtttcttag |
45323360 |
T |
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