View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13760_low_6 (Length: 441)
Name: NF13760_low_6
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 36951846 - 36951434
Alignment:
| Q |
18 |
agtagtagtgatgtaccagtaccttatcctcaacctttttccattcctcacttgtttgtttggcctcatggaggtgaaagcgcgtttctatgcggttctt |
117 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36951846 |
agtagcagtgatgtaccagtacctgatcctcaacctttttccattcctcacttgtttgtttggcctcatggaggtgaaagcgcgtttctatgcggttctt |
36951747 |
T |
|
| Q |
118 |
tcactgggtaacaannnnnnnnattagaattagagcacgtttgtcacaactttcttnnnnnnnnttataatttgaaagaannnnnnnncttctaaaaatg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
36951746 |
tcactgggtaacaattttttt-attagaattagagcacgtttgtcacaactttcttaaaaaaaattataatttgaaagaattttttttcttctaaaaatg |
36951648 |
T |
|
| Q |
218 |
ataaaaagttttgagtacctgttctagctagaaaattatttgagtatggattattcagcatggtattggtagatgtatgttgctgtcactttgtttcctt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36951647 |
ataaaaagttttgagtacctgttctagctagaaaattatttgagtatggattattcagcatggtattggtagatgtatgttgctgtcactttgtttcctt |
36951548 |
T |
|
| Q |
318 |
ttggtaagnnnnnnnnngttgtttattgcatactagaattagcttaatcatgttaattatttattgattgtagagtttattcaacatggtagatgtatgt |
417 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36951547 |
ttggtaagtttttttatgttgtttattacatactagaattagcttaatcatgttatttatttattgattgtatagtttattcaacatggtagatgtatgt |
36951448 |
T |
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| Q |
418 |
tgttgtcacctttg |
431 |
Q |
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|||||||||||||| |
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| T |
36951447 |
tgttgtcacctttg |
36951434 |
T |
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