View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13760_low_7 (Length: 406)

Name: NF13760_low_7
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13760_low_7
NF13760_low_7
[»] chr3 (6 HSPs)
chr3 (1-310)||(8584282-8584591)
chr3 (220-305)||(19844661-19844746)
chr3 (125-214)||(34142968-34143057)
chr3 (2-74)||(8553283-8553354)
chr3 (138-190)||(27634221-27634273)
chr3 (138-190)||(34519038-34519090)
[»] chr6 (6 HSPs)
chr6 (222-382)||(34245051-34245210)
chr6 (236-310)||(13213936-13214010)
chr6 (125-214)||(34244714-34244803)
chr6 (211-264)||(30579959-30580012)
chr6 (139-214)||(30580036-30580111)
chr6 (270-309)||(30579804-30579843)
[»] chr4 (10 HSPs)
chr4 (216-310)||(15041560-15041654)
chr4 (216-310)||(15112770-15112864)
chr4 (216-309)||(15039832-15039925)
chr4 (216-309)||(15114499-15114592)
chr4 (213-309)||(16003599-16003695)
chr4 (138-214)||(15041684-15041760)
chr4 (138-214)||(15112664-15112740)
chr4 (138-214)||(15039955-15040031)
chr4 (138-214)||(15114393-15114469)
chr4 (148-214)||(16003507-16003573)
[»] chr7 (5 HSPs)
chr7 (216-309)||(20186209-20186302)
chr7 (216-310)||(10866370-10866464)
chr7 (216-309)||(10868087-10868181)
chr7 (149-214)||(10867992-10868057)
chr7 (149-214)||(10866275-10866340)
[»] chr8 (3 HSPs)
chr8 (121-214)||(30187802-30187895)
chr8 (216-309)||(22692501-22692592)
chr8 (211-307)||(30187685-30187777)
[»] scaffold0590 (1 HSPs)
scaffold0590 (226-302)||(53-129)
[»] scaffold0275 (1 HSPs)
scaffold0275 (226-302)||(3846-3922)
[»] chr5 (2 HSPs)
chr5 (216-312)||(33566689-33566785)
chr5 (216-273)||(25598148-25598205)
[»] chr1 (1 HSPs)
chr1 (216-303)||(17309720-17309809)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 8584282 - 8584591
Alignment:
Q  1 ctactttgcagcaatacagaaaagaatgttgatcttttaggtcaccaaaatgtagctgattaggtcaatgtaatgttgagataacaatagttagtagagt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8584282 ctactttgcagcaatacagaaaagaatgttgatcttttaggtcaccaaaatgtagctgattaggtcaatgtaatgttgagataacaatagttagtagagt 8584381  T
Q  101 tagttaaggtagttatagacttatagttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8584382 tagttaaggtagttatagacttatagttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggacc 8584481  T
Q  201 aaccatgtactcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctatta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||  ||||||||||| ||||||    
T  8584482 aaccatgtactcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttatcttatgaagctaatctcaatctattcgatactatta 8584581  T
Q  301 tttctgatat 310  Q
    ||||||||||    
T  8584582 tttctgatat 8584591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 19844746 - 19844661
Alignment:
Q  220 attctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttct 305  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||||||||| |||||||  |||||||||||||||||||||||    
T  19844746 attctaagggttttcagtatgtttcttcctatcactcatacttctgctatgaaactaatctcaatctattcgatcctattatttct 19844661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 34142968 - 34143057
Alignment:
Q  125 agttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    |||||| ||||  ||||||| ||||| ||||||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||    
T  34142968 agttggttaaatgttagttagagagagctatagttagttacaagtagttagggtaattgagttctataaaaggaccaaccatgtactcat 34143057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 8553354 - 8553283
Alignment:
Q  2 tactttgcagcaatacagaaaagaatgttgatcttttaggtcaccaaaatgtagctgattaggtcaatgtaat 74  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||  |||||| ||||| ||||||||||||    
T  8553354 tactttgcagctatacagaaaatt-tgttgatcttttaggtcaccatcatgtagttgattgggtcaatgtaat 8553283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 27634273 - 27634221
Alignment:
Q  138 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtcta 190  Q
    ||||||| ||||||||||||||||||||  |||||||||  ||||||||||||    
T  27634273 ttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 27634221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 34519090 - 34519038
Alignment:
Q  138 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtcta 190  Q
    ||||||| ||||||||||||||||||||  |||||||||  ||||||||||||    
T  34519090 ttagttagagagaactatagttagttacaagtagttagggtaattgaggtcta 34519038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 222 - 382
Target Start/End: Original strand, 34245051 - 34245210
Alignment:
Q  222 tctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatatattgtgcgcgc 321  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  34245051 tctaagggttttccctatgtttcttcctatcaatcatacttctcctataaagctaatctacatctattcgatcctattatttctgatatattgttctcgc 34245150  T
Q  322 tgtgctgaggaagtttctgacctttttccctacacattgaagagggcgggtaaattcctta 382  Q
    |||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  34245151 tgtgctgagg-agtttctgaccttttaccctacactttgaagagggcgggtaaattcctta 34245210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 13214010 - 13213936
Alignment:
Q  236 ctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 310  Q
    ||||||||||||||||||||||||||||| |||||||||||||||  |||| || ||||||||||||| ||||||    
T  13214010 ctatgtttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttgtgatat 13213936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 34244714 - 34244803
Alignment:
Q  125 agttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    |||||| ||||  ||||||| ||||||||||||||||||||  ||||||| |   ||||||||||||||||||||||||||| |||||||    
T  34244714 agttggttaaatgttagttagagagaactatagttagttacaagtagttaaggtcattgaggtctataaaaggaccaaccatatactcat 34244803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 30580012 - 30579959
Alignment:
Q  211 tcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttct 264  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  30580012 tcataatgaattctaagggttttctctatgtttcttcctctcaatcatgcttct 30579959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 214
Target Start/End: Complemental strand, 30580111 - 30580036
Alignment:
Q  139 tagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    |||||| ||||||||||||||||||||  |||||||||  ||||||||||||||| | || |||||||| ||||||    
T  30580111 tagttagagagaactatagttagttacaagtagttagggtaattgaggtctataatatgatcaaccatgaactcat 30580036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 30579843 - 30579804
Alignment:
Q  270 gaagctaatctacatctattcgatcctattatttctgata 309  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  30579843 gaagctaatctacatctattcgatcctattatttatgata 30579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 310
Target Start/End: Complemental strand, 15041654 - 15041560
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| || ||||||||||||||||||||    
T  15041654 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgatat 15041560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 15112770 - 15112864
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| || ||||||||||||||||||||    
T  15112770 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgatat 15112864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 216 - 309
Target Start/End: Complemental strand, 15039925 - 15039832
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 309  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||| || |||||||||||||||||||    
T  15039925 atgaattctaagggttttccctatatttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15039832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 15114499 - 15114592
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 309  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |||| || |||||||||||||||||||    
T  15114499 atgaattctaagggttttccctatatttcttcctatcaatcatacttctcctatgaagctaatctcaatctctttgatcctattatttctgata 15114592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 16003599 - 16003695
Alignment:
Q  213 ataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 309  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| |||||| | |||||||| ||||||  |||| || |||||||||||||||||||    
T  16003599 ataatgaattctaagagtttttcctatgtttcttcctatcaattatacttttcctatgaagttaatctcaatctctttgatcctattatttctgata 16003695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 15041760 - 15041684
Alignment:
Q  138 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    ||||||| ||||||||||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  15041760 ttagttagagagaactatagttagttacaagtagttagggtcattgaggtctataaaaggaccaaccatgtactcat 15041684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 15112664 - 15112740
Alignment:
Q  138 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    ||||||| ||||||||||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  15112664 ttagttagagagaactatagttagttacaagtagttagggtcattgaggtctataaaaggaccaaccatgtactcat 15112740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 15040031 - 15039955
Alignment:
Q  138 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    ||||||| ||||||| ||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  15040031 ttagttagagagaacaatagttagttacaagtagttagggtcattgaggtctataaaaggaccaaccatgtactcat 15039955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 15114393 - 15114469
Alignment:
Q  138 ttagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    ||||||| ||||||| ||||||||||||  |||||||||   |||||||||||||||||||||||||||||||||||    
T  15114393 ttagttagagagaacaatagttagttacaagtagttagggtcattgaggtctataaaaggaccaaccatgtactcat 15114469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 148 - 214
Target Start/End: Original strand, 16003507 - 16003573
Alignment:
Q  148 agaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    ||||||||||||||||||  |||||||||  |||||||||||||||||||||||||||| |||||||    
T  16003507 agaactatagttagttacaagtagttagggtaattgaggtctataaaaggaccaaccatatactcat 16003573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 20186209 - 20186302
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||| ||||||||||||||||||||||    
T  20186209 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctcctatgaggctaatctcaatcttttcgatcctattatttctgata 20186302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 10866370 - 10866464
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatat 310  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| ||||||  |||| || ||||||||||||||||||||    
T  10866370 atgaattctaagggttttccctatgtttcttcatatcaatcatacttcttttatgaagttaatctcaatctctttgatcctattatttctgatat 10866464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 10868087 - 10868181
Alignment:
Q  216 atgaattctaagggtttt-ccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 309  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  | ||||| ||||||  |||| || |||||||||||||||||||    
T  10868087 atgaattctaagggtttttccctatgtttcttcctatcaatcatacttctcttctgaagttaatctcaatctctttgatcctattatttctgata 10868181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 10867992 - 10868057
Alignment:
Q  149 gaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    |||||||||||||||||   ||||||||  ||||||||||||||||||||||||||||||||||||    
T  10867992 gaactatagttagttacaactagttagggtaattgaggtctataaaaggaccaaccatgtactcat 10868057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 10866275 - 10866340
Alignment:
Q  149 gaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    |||||||||||||||||   ||||||||  ||||||| | ||||||||||||||||||||||||||    
T  10866275 gaactatagttagttacaactagttagggtaattgagatttataaaaggaccaaccatgtactcat 10866340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 30187895 - 30187802
Alignment:
Q  121 ttatagttgggtaaaaattagttacagagaactatagttagttacttgtagttaggaaaattgaggtctataaaaggaccaaccatgtactcat 214  Q
    |||||||||| ||||||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||    
T  30187895 ttatagttggttaaaaattagttacagagaactataattagttacatgtagttaaggaaattgaggtctataaaaggaccaatcatgtactcat 30187802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 216 - 309
Target Start/End: Original strand, 22692501 - 22692592
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgata 309  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||||||||  ||||||||||||  |||||||||||||    
T  22692501 atgaattctaagggttttcactgtgtttcttcctatcaatcatacttctcctataaagctaatctcaatctattcgatc--attatttctgata 22692592  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 30187777 - 30187685
Alignment:
Q  211 tcataatgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctga 307  Q
    |||||||||||| ||||||||||||    |||||||||||||||||||||||||  || |||||||||||  | ||| |||||||||||||||||||    
T  30187777 tcataatgaattttaagggttttcc----gtttcttcctatcaatcatacttctcttacgaagctaatctcaacctaatcgatcctattatttctga 30187685  T

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Target: scaffold0590 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 226 - 302
Target Start/End: Original strand, 53 - 129
Alignment:
Q  226 agggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatt 302  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  53 agggttttccctatgtttcttactatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 129  T

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Target: scaffold0275 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 226 - 302
Target Start/End: Complemental strand, 3922 - 3846
Alignment:
Q  226 agggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatt 302  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3922 agggttttccctatgtttcttactatcaatcatacttctcctatgaagctaatctacatctattcgatcctattatt 3846  T

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Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 33566785 - 33566689
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattatttctgatatat 312  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| || |||||| |||||||||||||||    
T  33566785 atgaattctaatggttttccctatatttcttcttatcaatcatacttctcctatgaagctaatctacatctctttgatccttttatttctgatatat 33566689  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 273
Target Start/End: Complemental strand, 25598205 - 25598148
Alignment:
Q  216 atgaattctaagggttttccctatgtttcttcctatcaatcatacttctgctatgaag 273  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||    
T  25598205 atgaattctaatggttttccctatgtttctacctatcaatcatacttctcctatgaag 25598148  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 303
Target Start/End: Complemental strand, 17309809 - 17309720
Alignment:
Q  216 atgaattctaagggtttt--ccctatgtttcttcctatcaatcatacttctgctatgaagctaatctacatctattcgatcctattattt 303  Q
    ||||||||||||||||||  | |||||||||||| ||| |||||||||||| ||||||||||||||| ||| | ||||||||||||||||    
T  17309809 atgaattctaagggttttttctctatgtttcttcttatgaatcatacttctcctatgaagctaatcttcatttcttcgatcctattattt 17309720  T

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