View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13760_low_9 (Length: 345)
Name: NF13760_low_9
Description: NF13760
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13760_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 1530396 - 1530102
Alignment:
| Q |
13 |
attattctgcaaaaattaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530396 |
attattctgcaaaaattaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaa |
1530297 |
T |
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| Q |
113 |
caatctattcctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaataac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530296 |
caatctattcctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaataac |
1530197 |
T |
|
| Q |
213 |
taacatctcaataatcaatcaccatttcaccactcaatagaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1530196 |
taacatctcaataatcaatcaccatttcaccactcaatagaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaatt |
1530102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 22476322 - 22476614
Alignment:
| Q |
17 |
ttctgcaaaaattaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22476322 |
ttctgcaaaaattaggccaaattgaaatgaacataaatataagaatagtgcatattattctgcaaatccatcctaactaattcataattaatcaaacaat |
22476421 |
T |
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| Q |
117 |
ctattcctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattcc-aaaaaacacaaattatatacagctaaaaataactaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||| |
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| T |
22476422 |
ctattcctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaaacaaaaattatatacaactaaaaataactaa |
22476521 |
T |
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| Q |
216 |
catctcaataatcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaatt |
307 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22476522 |
catctcaataaccaatcaccatttcaccactcaataagaatccagcaaattatcatcaagcatacccagaaccaaggatcactctgataaatt |
22476614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 13 - 307
Target Start/End: Complemental strand, 26842174 - 26841876
Alignment:
| Q |
13 |
attattctgcaaaaattaggccaaattgaaatgaacataaatataagaa---tagtgcatattattctgcaaatccatcctaactaattcataattaatc |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26842174 |
attattctgcaaaaattaggccaaattgaaatgaacataaatataagaagaatagtgcatattattctgcaaatccatcctaactaattcacaattaatc |
26842075 |
T |
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| Q |
110 |
aaacaatctattcctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaaattccaaaaaacacaaattatatacagctaaaaat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |
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| T |
26842074 |
aaacaatctattcctccaacaaaaaacactacttttcaaaccagtacatatcaatcaaataccaatttccaaaaaacacagattatatacaactaaaaat |
26841975 |
T |
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| Q |
210 |
aactaacatctcaataatcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaaggatcactctgataaatt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26841974 |
aactaacatctcaataatcaatcaccatttcaccactcaataagaatctagcaaattatcatcaagcatacccagaaccaaggatcactctgataaatt |
26841876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 65 - 306
Target Start/End: Complemental strand, 29099432 - 29099185
Alignment:
| Q |
65 |
tgcatattattctgcaaatccatcctaactaattcataattaatcaaacaatctattcctccaacaaaaaacactacttttcaaaccagtacatatcaat |
164 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
29099432 |
tgcatattattctgcaaatccatcctaactaattcctaattaatcaagcaatctcttccacagacaaaaaacactacttttcaaaccagtacatatcaat |
29099333 |
T |
|
| Q |
165 |
caaataccaaattccaaaaaacac-----aaattatatacagctaaaaataactaacatctcaataatcaatcaccatttcaccactcaata-gaatcca |
258 |
Q |
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|||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29099332 |
caaataccaaattccaaaaaacacagattatattatatacagctaaaagtaactaacatctcaataatcaatcaccatttcaccactcaatatgaatcca |
29099233 |
T |
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| Q |
259 |
gcaaattatcatcaagcatactcagaaccaaggatcactctgataaat |
306 |
Q |
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||||| ||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
29099232 |
gcaaaccatcatcaagcataaccagaagcaagaatcactctgataaat |
29099185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 191 - 306
Target Start/End: Complemental strand, 21923182 - 21923066
Alignment:
| Q |
191 |
attatatacagctaaaaataactaacatctcaataatcaatcaccatttcaccactcaat-agaatccagcaaattatcatcaagcatactcagaaccaa |
289 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||| |
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| T |
21923182 |
attatatacagctaaaaataactaacatctcaataattaatcaccatttcaccactcaataagaatccaacaaattatcatcaagcataaccagaaccaa |
21923083 |
T |
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| Q |
290 |
ggatcactctgataaat |
306 |
Q |
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||||||||||||||||| |
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| T |
21923082 |
ggatcactctgataaat |
21923066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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