View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13761_high_1 (Length: 533)
Name: NF13761_high_1
Description: NF13761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13761_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 519
Target Start/End: Complemental strand, 5933188 - 5932662
Alignment:
| Q |
17 |
acctctcaaagatagcttctcaggtaaacgtttaagggttaaaactctaaacctgcactataaatactaatccatagacactaggtcaggtatcctcact |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5933188 |
acctctcaaagatagcttctcaggtaaacgtctaagggtcaaaactctaaacctgcactataaatactaatccatagacactaggttaggtatcctcact |
5933089 |
T |
|
| Q |
117 |
tttacccctaaaacgcctatcattccaaggcactta--------acactagatgtgtgtgcaggtacaccacccccattcgcccggagaaaaaggttgtt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5933088 |
tttacccctaaaacgcctatcattccaaggcacttactgacttaacactagatgtgtgtgcaggtacaccacccccattcgcccagagaaaaaggttgtt |
5932989 |
T |
|
| Q |
209 |
attgatggaagtacaccaccccca-----------------ttcacttgggaactaacctcagaacaaacattttcattcctttttcaaagacaaatccc |
291 |
Q |
| |
|
|||||||||||||| | || | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5932988 |
attgatggaagtaccctactcaaaggctattcaatggcgacttcacttgggaactaacctcagaacaaacattttcattcctttttcaaagacaaatccc |
5932889 |
T |
|
| Q |
292 |
atggttaatacttgtttaaattttcgtcaagcatcagaccattggtacccttcaccacaaaacaaaccagaaatcaaaatacctatttattcaccaaata |
391 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5932888 |
atgtttaatacttgtttaaattttcgtcaagcatcagaccattggtacccttcaccacaaaacaaaccagaaa-caaaatacctatttattcaccaaata |
5932790 |
T |
|
| Q |
392 |
ccccctcagtggaaaacccgttcaaaagtcgtgtcgtatatatgatgggatccatctccaacctcttaggagtatacgaccctacgacaatttctacctt |
491 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5932789 |
ccccctcagtggaaaacccgttcaacagtcgtgtcgtatatatgatgggatccatctccaacctcttaggagtatacgaccctacgacaatttctacctt |
5932690 |
T |
|
| Q |
492 |
caatcgggttgaagccctaatttccctt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5932689 |
caatcgggttgaagccctaatttccctt |
5932662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 25692339 - 25692378
Alignment:
| Q |
164 |
gtgtgcaggtacaccacccccattcgcccggagaaaaagg |
203 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25692339 |
gtgtgcaggtacaccaccctcattcgcccggagaaaaagg |
25692378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 25692231 - 25692308
Alignment:
| Q |
63 |
ctaaacctgcactataaatactaatccatagacactaggtcaggtatcctcacttttacccctaaaacgcctatcattc |
141 |
Q |
| |
|
|||||||| | ||||||||||||| |||| |||||| ||| ||||| |||||||||| |||||||| |||||||||| |
|
|
| T |
25692231 |
ctaaacctactctataaatactaacccatggacactgggttaggtacgctcactttta-ccctaaaatacctatcattc |
25692308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 41808671 - 41808639
Alignment:
| Q |
249 |
cctcagaacaaacattttcattcctttttcaaa |
281 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
41808671 |
cctcagaacaaacatttgcattcctttttcaaa |
41808639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University