View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13761_high_4 (Length: 334)
Name: NF13761_high_4
Description: NF13761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13761_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 323
Target Start/End: Original strand, 34959110 - 34959418
Alignment:
| Q |
16 |
cttgagtcaataatactcaaaaaccacatgatttcattgacatataaattagaatccaaggcaatgaaattaaagttactctttatgtattctttatatt |
115 |
Q |
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| T |
34959110 |
cttgagtcaataatactcaaaaaccacatgatttcattgacatataaattagaatccaaggcaatgaaattaaagttactctttatgtattctttatatt |
34959209 |
T |
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| Q |
116 |
gatttgagctatcatagtactgagtgtcccataggtaatggaatcacttacatgtgctagctaagagcccaaagattttaaaaatagaaggtttttagta |
215 |
Q |
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| T |
34959210 |
gatttgagctatcatagtactgagtgtcccataggtaatggaatcacttacatgtgctagctaagagcccaaagattttaaaaatagaaggtttttagta |
34959309 |
T |
|
| Q |
216 |
tggttaaattttgtttgaattaaaagta-nnnnnnncctcatacgtcattattcttagcacatgannnnnnnaatgttttctatacataattaataagcc |
314 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34959310 |
tggttaaattttgtttgaattaaaagtattttttttcctcatacgtcattattcttagcacatgacccccccaatgttttctatacataattaataagcc |
34959409 |
T |
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| Q |
315 |
catacctat |
323 |
Q |
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||||||||| |
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| T |
34959410 |
catacctat |
34959418 |
T |
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