View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13761_low_3 (Length: 422)
Name: NF13761_low_3
Description: NF13761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13761_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 70 - 404
Target Start/End: Complemental strand, 7756063 - 7755710
Alignment:
| Q |
70 |
gataatggtagtggaatgaacaaactcatcctcaattttttgtgaaaa-gtacataaatttctctttatctatgtctctcctcaagtatggttacgatgt |
168 |
Q |
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| T |
7756063 |
gataatggtagtggaatgaacaaactcatcctcaattttttgtgaaaaagtacataaatttctctttatctatgtctctcctcaagtatggttacaatgt |
7755964 |
T |
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| Q |
169 |
tagt---------------acaagaaaaacatgttaagttgattgtgatggatgtaatgttgttagtacaatccatttcgtttgtgatagaatttatgtt |
253 |
Q |
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| T |
7755963 |
tagtgattattttgtgagtacaagaaaaacatgttaagttgattatgatggatgtaatgttgttagtacaatccatttcgtttgtgatagaatttatgtt |
7755864 |
T |
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| Q |
254 |
gccgcagttttcacctctccaacctatgcaagtgttagtgaagtcatactagaaatgaaatgcaaatctgatctcattcacatcatttatagcttattaa |
353 |
Q |
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| T |
7755863 |
gccgcagttttcacctctccaacctatgcaagtgttagtgaagtcatactagaaatgaaatgcaaatctgatctcattcacatcatttatagcttatcaa |
7755764 |
T |
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| Q |
354 |
gcatgtta---ttctatacctgcagctaatacctaatagcatatagtcacactt |
404 |
Q |
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| T |
7755763 |
gcatgttattcttctatacctgcagctaatacctaatagcatatagtcacactt |
7755710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 221 - 350
Target Start/End: Original strand, 10969109 - 10969238
Alignment:
| Q |
221 |
acaatccatttcgtttgtgatagaatttatgttgccgcagttttcacctctccaacctatgcaagtgttagtgaagtcatactagaaatgaaatgcaaat |
320 |
Q |
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| T |
10969109 |
acaatccatttagtttgtgatgaaatctatgcagccactgtttttacctcaccaagctatgtaagtgttagtgaagtcgtacaagaaatgaagtgcaacc |
10969208 |
T |
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| Q |
321 |
ctgatctcattcacatcatttatagcttat |
350 |
Q |
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| T |
10969209 |
ttgatctcattcatgttatttatagtttat |
10969238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 7756128 - 7756088
Alignment:
| Q |
5 |
taattcttcatcagagattgaagagacattattattcaatt |
45 |
Q |
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| T |
7756128 |
taattcttcatcagagattgaagagacattattattcaatt |
7756088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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