View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13761_low_7 (Length: 247)

Name: NF13761_low_7
Description: NF13761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13761_low_7
NF13761_low_7
[»] chr4 (4 HSPs)
chr4 (1-230)||(29149855-29150085)
chr4 (1-230)||(26652608-26652838)
chr4 (1-230)||(51921993-51922223)
chr4 (118-230)||(10127077-10127189)
[»] chr5 (3 HSPs)
chr5 (1-230)||(35759525-35759755)
chr5 (1-230)||(3667191-3667421)
chr5 (2-50)||(7547615-7547663)
[»] chr2 (5 HSPs)
chr2 (1-230)||(2212832-2213062)
chr2 (1-230)||(28127839-28128069)
chr2 (64-230)||(44619614-44619781)
chr2 (64-230)||(2213851-2214018)
chr2 (109-161)||(42597337-42597389)
[»] chr3 (3 HSPs)
chr3 (1-230)||(26518987-26519217)
chr3 (12-230)||(10333215-10333425)
chr3 (136-218)||(38172910-38172992)
[»] chr8 (2 HSPs)
chr8 (118-230)||(20080022-20080134)
chr8 (111-230)||(27650977-27651094)
[»] chr7 (1 HSPs)
chr7 (136-224)||(3342192-3342280)
[»] chr1 (1 HSPs)
chr1 (118-224)||(31222737-31222843)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 29150085 - 29149855
Alignment:
Q  1 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagcttttt-gttttgtttgggtacaggaaaagtgcttctc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  29150085 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagcttttttgttttgtttgggtacaggaaaagtgcttctc 29149986  T
Q  100 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29149985 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 29149886  T
Q  200 tgatacactttactaaattacccattacttt 230  Q
    |||||||||||||||||||||||||||||||    
T  29149885 tgatacactttactaaattacccattacttt 29149855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 26652838 - 26652608
Alignment:
Q  1 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagcttttt-gttttgtttgggtacaggaaaagtgcttctc 99  Q
    ||||||||||  | |||||||| ||||||||||| ||||| ||| ||||||  ||||| || |||||| ||||||||||| ||||| |||||||| ||      
T  26652838 ctgtttggcatgatgtttttcttctcaaaacgtgctttttttttgccaaacgtggttttcaacttttttgttttgtttggatacagaaaaagtgcatccg 26652739  T
Q  100 taaaacgcag-ttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtga 198  Q
    | |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| |||||||||    
T  26652738 tgaaacgcaggttttggtgcaaaacgccggtggagatgaagctgaaattcctagcttccacggcaaagcaaaatcaagtttgga-tttcaattttggtga 26652640  T
Q  199 ttgatacactttactaaattacccattacttt 230  Q
    |||||||||||||| ||||||||||| |||||    
T  26652639 ttgatacactttaccaaattacccataacttt 26652608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 51921993 - 51922223
Alignment:
Q  1 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagcttttt-gttttgtttgggtacaggaaaagtgcttctc 99  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||| ||||||  ||||| || |||||| |||||||||||||  || |||||||| ||      
T  51921993 ctgttttgcatcacgtttttctcctcaaaacgtgttttttctttgccaaacgtggttttcaacttttttgttttgtttgggtgtagaaaaagtgcatccg 51922092  T
Q  100 taaaacgcag-ttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtga 198  Q
     ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||| |||| ||||    
T  51922093 caaaacgcaggttttggtgcaaaacgccggtggggatgaagctgaaattcctagcttccacggcaaagcaaaatcaagtttgga-tttcaatttttgtga 51922191  T
Q  199 ttgatacactttactaaattacccattacttt 230  Q
    |||||||||||||| ||||||||||| |||||    
T  51922192 ttgatacactttaccaaattacccataacttt 51922223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 10127189 - 10127077
Alignment:
Q  118 caaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgattgatacactttactaaat 217  Q
    ||||||||| || ||||||||| ||||| ||||||||||||||| ||||||||| | |||||||||||| | ||||||||||||||||| ||||| ||||    
T  10127189 caaaacgccagtggagatgaagttgaaaatcctagcttctacggcaaagcaaaatcgagtttggattttaacttttggtgattgatacattttaccaaat 10127090  T
Q  218 tacccattacttt 230  Q
    |||| || |||||    
T  10127089 taccgataacttt 10127077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 35759525 - 35759755
Alignment:
Q  1 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagctttt-tgttttgtttgggtacaggaaaagtgcttctc 99  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35759525 ctgtttggcaacacgtttttctcttcaaaacgtggtttttctttaccaaactcggtttccagcttttttgttttgtttgggtacaggaaaagtgcttctc 35759624  T
Q  100 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35759625 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 35759724  T
Q  200 tgatacactttactaaattacccattacttt 230  Q
    |||||||||||||||||||||||||||||||    
T  35759725 tgatacactttactaaattacccattacttt 35759755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3667191 - 3667421
Alignment:
Q  1 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagctttt-tgttttgtttgggtacaggaaaagtgcttctc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  3667191 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggttttcagcttttttgttttgtttgggtacaagaaaagtgcttctc 3667290  T
Q  100 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3667291 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 3667390  T
Q  200 tgatacactttactaaattacccattacttt 230  Q
    ||||||||||||||||||||| |||||||||    
T  3667391 tgatacactttactaaattactcattacttt 3667421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 7547615 - 7547663
Alignment:
Q  2 tgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaa 50  Q
    ||||||||| |||||||||||| ||||||| ||  ||||||||||||||    
T  7547615 tgtttggcatcacgtttttctcttcaaaacatgtgttttctttaccaaa 7547663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2212832 - 2213062
Alignment:
Q  1 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagctttt-tgttttgtttgggtacaggaaaagtgcttctc 99  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2212832 ctgtttggcaacacgtttttctcctcaaaacgtgatttttctttaccaaactcggtttccagcttttttgttttgtttgggtacaggaaaagtgcttctc 2212931  T
Q  100 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2212932 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 2213031  T
Q  200 tgatacactttactaaattacccattacttt 230  Q
    |||||||||||||||||||||||||||||||    
T  2213032 tgatacactttactaaattacccattacttt 2213062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28128069 - 28127839
Alignment:
Q  1 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagcttttt-gttttgtttgggtacaggaaaagtgcttctc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28128069 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagcttttttgttttgtttgggtacaggaaaagtgcttctc 28127970  T
Q  100 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28127969 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctccggtaaagcaaaagcaagtttggattttcatttttggtgat 28127870  T
Q  200 tgatacactttactaaattacccattacttt 230  Q
    |||||||||||||||||||||||||||||||    
T  28127869 tgatacactttactaaattacccattacttt 28127839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 44619781 - 44619614
Alignment:
Q  64 tttttgttttgtttgggtacaggaaaagtgcttctctaaaacgcagttttgg-tgcaaaacgccggtagagatgaagctgaaattcctagcttctacggt 162  Q
    ||||||| |||||||| |  || ||||||| ||| || |||||  ||||||| | ||||||||| |||||||||||||||||| |||||||||||||||     
T  44619781 tttttgtgttgtttggatgaagaaaaagtgattcactgaaacgtggttttggatccaaaacgccagtagagatgaagctgaaaatcctagcttctacggc 44619682  T
Q  163 aaagcaaaagcaagtttggattttcatttttggtgattgatacactttactaaattacccattacttt 230  Q
    ||||||||| | |||||||||||| | ||||||||||||| ||| ||||| ||||||||||| |||||    
T  44619681 aaagcaaaatcgagtttggattttaaattttggtgattgaaacattttaccaaattacccataacttt 44619614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 230
Target Start/End: Original strand, 2213851 - 2214018
Alignment:
Q  64 tttttgttttgtttgggtacaggaaaagtgcttctctaaaacgcagttttgg-tgcaaaacgccggtagagatgaagctgaaattcctagcttctacggt 162  Q
    ||||||| |||||||| |  || ||||||| ||| || |||||  ||||||| | ||||||||| |||||||||||||||||| ||||| ||||||| |     
T  2213851 tttttgtgttgtttggatgaagaaaaagtgattcactgaaacgtggttttgggtccaaaacgccagtagagatgaagctgaaaatcctaacttctactgc 2213950  T
Q  163 aaagcaaaagcaagtttggattttcatttttggtgattgatacactttactaaattacccattacttt 230  Q
    ||||||||| | ||||||||| || | ||||| ||||||||||| ||||| |||||||| || |||||    
T  2213951 aaagcaaaatcgagtttggatattaacttttgatgattgatacattttaccaaattacctataacttt 2214018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 42597337 - 42597389
Alignment:
Q  109 gttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacgg 161  Q
    |||||| | ||||||| ||||||||||||||||||||||| ||||||||||||    
T  42597337 gttttgctccaaaacgtcggtagagatgaagctgaaattcgtagcttctacgg 42597389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 26518987 - 26519217
Alignment:
Q  1 ctgtttggcaacacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagctttt-tgttttgtttgggtacaggaaaagtgcttctc 99  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  26518987 ctgtttggcaacacgtttttctcctcaaaacgtggtttttatttaccaaactcggttttcagcttttttgttttgtttgggtacaggaaaagtgcttctc 26519086  T
Q  100 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26519087 taaaacgcagttttggtgcaaaacgccggtagagatgaagctgaaattcctagcttcttcggtaaagcaaaagcaagtttggattttcatttttggtgat 26519186  T
Q  200 tgatacactttactaaattacccattacttt 230  Q
    |||||||||||||||||||||||||||||||    
T  26519187 tgatacactttactaaattacccattacttt 26519217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 10333215 - 10333425
Alignment:
Q  12 cacgtttttctcctcaaaacgtggtttttctttaccaaactcggtttccagcttttt-gttttgtttgggtacaggaaaagtgcttctctaaaacgcagt 110  Q
    ||||||||||||||||||||||| ||||||||| ||||||  ||||| || |||||| ||||||||||||||||  |||||||| ||  |        ||    
T  10333215 cacgtttttctcctcaaaacgtgctttttctttgccaaacgtggttttcaacttttttgttttgtttgggtacaataaaagtgcatccat--------gt 10333306  T
Q  111 tttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgattgatacacttt 210  Q
    ||||||||||||||| ||| | ||||| |||||||||||||||||| |||| |||||||||  ||||||||| ||||| |||| | ||||||||||||||    
T  10333307 tttggtgcaaaacgctggtggggatgatgctgaaattcctagcttccacggcaaagcaaaattaagtttgga-tttcaattttagggattgatacacttt 10333405  T
Q  211 actaaattacccattacttt 230  Q
    || ||||||||||| |||||    
T  10333406 accaaattacccataacttt 10333425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 38172992 - 38172910
Alignment:
Q  136 gaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgattgatacactttactaaatt 218  Q
    ||||||||||||||||||||| |||| ||| ||||| || |||||  |||  |||||  ||||||| |||||||||| |||||    
T  38172992 gaagctgaaattcctagcttccacggcaaatcaaaatcacgtttgagtttcaattttcagtgattggtacactttaccaaatt 38172910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 20080134 - 20080022
Alignment:
Q  118 caaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgattgatacactttactaaat 217  Q
    ||||||||| |||||||||||||||||| ||||||||||||| | ||||||||| | |||||||||||| | ||||||||||||| ||| ||||| ||||    
T  20080134 caaaacgccagtagagatgaagctgaaaatcctagcttctacagcaaagcaaaatcgagtttggattttaaattttggtgattgaaacattttaccaaat 20080035  T
Q  218 tacccattacttt 230  Q
    ||||||| |||||    
T  20080034 tacccataacttt 20080022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 230
Target Start/End: Complemental strand, 27651094 - 27650977
Alignment:
Q  111 tttggtgcaaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgattgatacacttt 210  Q
    |||||| |||||||||||||| || ||||||| ||||| ||||||| ||| |||||||||| ||||||||| | || ||||||||||||||| ||||  |    
T  27651094 tttggttcaaaacgccggtagggaagaagctggaattcttagcttccacgttaaagcaaaatcaagtttgggtattaatttttggtgattgaaacac--t 27650997  T
Q  211 actaaattacccattacttt 230  Q
    || ||||||||||| |||||    
T  27650996 accaaattacccataacttt 27650977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 224
Target Start/End: Original strand, 3342192 - 3342280
Alignment:
Q  136 gaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgattgatacactttactaaattacccat 224  Q
    ||||||||||||||||||||| |||| ||| ||||| || |||||| |||  |||||  ||||||| |||||||||| |||||||||||    
T  3342192 gaagctgaaattcctagcttccacggcaaatcaaaatcacgtttgggtttcaattttcagtgattggtacactttaccaaattacccat 3342280  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 31222737 - 31222843
Alignment:
Q  118 caaaacgccggtagagatgaagctgaaattcctagcttctacggtaaagcaaaagcaagtttggattttcatttttggtgattgatacactttactaaat 217  Q
    ||||||||| ||| ||  ||||||||||||||||||||| |||| ||| ||||| || |||||  |||  |||||  ||||||| |||||||||| ||||    
T  31222737 caaaacgccagtacaggagaagctgaaattcctagcttccacggcaaatcaaaatcacgtttgagtttcaattttcagtgattggtacactttaccaaat 31222836  T
Q  218 tacccat 224  Q
    |||||||    
T  31222837 tacccat 31222843  T

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