View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13762_high_12 (Length: 324)

Name: NF13762_high_12
Description: NF13762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13762_high_12
NF13762_high_12
[»] chr4 (8 HSPs)
chr4 (131-324)||(18343492-18343685)
chr4 (40-123)||(18343719-18343802)
chr4 (162-211)||(506506-506555)
chr4 (162-211)||(18042075-18042124)
chr4 (138-293)||(50593542-50593696)
chr4 (19-52)||(18343845-18343878)
chr4 (161-199)||(18179696-18179734)
chr4 (19-52)||(36639055-36639088)
[»] scaffold0002 (6 HSPs)
scaffold0002 (131-324)||(163684-163877)
scaffold0002 (155-289)||(278246-278382)
scaffold0002 (160-202)||(190645-190687)
scaffold0002 (41-88)||(163542-163589)
scaffold0002 (19-52)||(163465-163498)
scaffold0002 (88-123)||(163610-163645)
[»] scaffold0702 (1 HSPs)
scaffold0702 (223-324)||(6873-6974)
[»] chr8 (1 HSPs)
chr8 (223-324)||(35194958-35195059)
[»] chr3 (3 HSPs)
chr3 (150-251)||(54630176-54630277)
chr3 (162-211)||(17223707-17223756)
chr3 (160-201)||(13226970-13227011)
[»] scaffold1779 (1 HSPs)
scaffold1779 (156-304)||(48-196)
[»] chr6 (4 HSPs)
chr6 (131-184)||(31058812-31058865)
chr6 (162-211)||(14543003-14543052)
chr6 (74-123)||(31058724-31058773)
chr6 (161-199)||(4639385-4639423)
[»] scaffold0008 (1 HSPs)
scaffold0008 (162-211)||(265168-265217)
[»] chr7 (4 HSPs)
chr7 (162-211)||(6930438-6930487)
chr7 (160-201)||(1399882-1399923)
chr7 (160-201)||(18961072-18961112)
chr7 (160-201)||(18993033-18993073)
[»] chr5 (1 HSPs)
chr5 (162-211)||(19153780-19153829)
[»] scaffold0625 (1 HSPs)
scaffold0625 (160-201)||(8623-8664)
[»] scaffold0330 (2 HSPs)
scaffold0330 (43-88)||(13433-13478)
scaffold0330 (88-123)||(13377-13412)
[»] chr2 (1 HSPs)
chr2 (163-211)||(17442387-17442435)
[»] scaffold0477 (1 HSPs)
scaffold0477 (161-199)||(8693-8731)
[»] chr1 (2 HSPs)
chr1 (161-199)||(31265991-31266029)
chr1 (162-198)||(49771361-49771397)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 131 - 324
Target Start/End: Complemental strand, 18343685 - 18343492
Alignment:
Q  131 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343685 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 18343586  T
Q  231 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaata 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343585 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaata 18343492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 18343802 - 18343719
Alignment:
Q  40 gaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343802 gaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 18343719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 506506 - 506555
Alignment:
Q  162 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  506506 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 506555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 18042124 - 18042075
Alignment:
Q  162 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18042124 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 18042075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 293
Target Start/End: Original strand, 50593542 - 50593696
Alignment:
Q  138 tatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataa 237  Q
    |||||||  |||||||||| | ||| ||||||| ||||  |||||||| | || | ||| |||||||||||| ||||||| ||| |||||  ||||||||    
T  50593542 tattttttgatcgatttatgcacgatgagccgtgtgagacgaaaatctaacgtgcagtt-tgtaatagagatagaattgataaacaaccactaactataa 50593640  T
Q  238 ccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcct 293  Q
    |||| |||||||||||| |  ||||||||||| ||||| ||| ||| |||||||||    
T  50593641 cccccaaagaaccagatccaataaacaacatcaaggaaaaattaaaagaaaagcct 50593696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 18343845 - 18343878
Alignment:
Q  19 gttttgatataaggttctaacgaatccatatttg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  18343845 gttttgatataaggttctaacgaatccatatttg 18343878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 18179734 - 18179696
Alignment:
Q  161 gaggagccgtatgaggtgaaaatctcatgtacggttctg 199  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  18179734 gaggagccgtatgagatgaaaatctcacgtacggttctg 18179696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 36639088 - 36639055
Alignment:
Q  19 gttttgatataaggttctaacgaatccatatttg 52  Q
    |||||||||||| |||||||||||||||||||||    
T  36639088 gttttgatataatgttctaacgaatccatatttg 36639055  T

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Target: scaffold0002 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 131 - 324
Target Start/End: Original strand, 163684 - 163877
Alignment:
Q  131 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  163684 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataactatca 163783  T
Q  231 actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaata 324  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  163784 actataaccccaaaagaaccagattccgcaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcgaaaaata 163877  T

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Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 289
Target Start/End: Complemental strand, 278382 - 278246
Alignment:
Q  155 attcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaata--accatcaactataaccccaaaagaaccag 252  Q
    ||||||||||||| | |||||  |||| |||||||| | ||| || | ||||||||||| | ||||| |  |||||| ||||||||||||||||||||||    
T  278382 attcgcgaggagctggatgagaagaaactctcatgtccagttttggagtagagatggaactaagaaagagaaccatcgactataaccccaaaagaaccag 278283  T
Q  253 attccgtaaacaacatcgaggaagaatgaaaggaaaa 289  Q
    ||| || ||||||||| ||||||||||||||||||||    
T  278282 atttcgcaaacaacatagaggaagaatgaaaggaaaa 278246  T

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Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 190645 - 190687
Alignment:
Q  160 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 202  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  190645 cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa 190687  T

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Target: scaffold0002; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 163542 - 163589
Alignment:
Q  41 aatccatatttggttctatatcaaagcaagatatacaaatttctaata 88  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  163542 aatccatatttggttttatatccaagcaagatatacaaatttctaata 163589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 163498 - 163465
Alignment:
Q  19 gttttgatataaggttctaacgaatccatatttg 52  Q
    ||||||||||||||||||||||||||||||||||    
T  163498 gttttgatataaggttctaacgaatccatatttg 163465  T

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Target: scaffold0002; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 163610 - 163645
Alignment:
Q  88 atgtcaaaaaatcccgcgattgtattctattttaaa 123  Q
    ||||||||||||||||||||| ||||||||||||||    
T  163610 atgtcaaaaaatcccgcgattctattctattttaaa 163645  T

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Target: scaffold0702 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 223 - 324
Target Start/End: Original strand, 6873 - 6974
Alignment:
Q  223 aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 322  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6873 aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 6972  T
Q  323 ta 324  Q
    ||    
T  6973 ta 6974  T

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Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 223 - 324
Target Start/End: Original strand, 35194958 - 35195059
Alignment:
Q  223 aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 322  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35194958 aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa 35195057  T
Q  323 ta 324  Q
    ||    
T  35195058 ta 35195059  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 54630277 - 54630176
Alignment:
Q  150 gatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaac 249  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  54630277 gatttattcgtgaggagctgtatggggtgaaaatctcatgtacgattttgtaatagagatggaattgagaaataactatcaactataacaccaaaagaac 54630178  T
Q  250 ca 251  Q
    ||    
T  54630177 ca 54630176  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 17223756 - 17223707
Alignment:
Q  162 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17223756 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 17223707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 13226970 - 13227011
Alignment:
Q  160 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13226970 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 13227011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1779 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 156 - 304
Target Start/End: Original strand, 48 - 196
Alignment:
Q  156 ttcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagatt 255  Q
    |||||||||||| | |||||  |||| |||||||| | |||||||| ||||||||||||| | ||| || ||||||||||||||||||||||||| ||||    
T  48 ttcgcgaggagctggatgagaagaaactctcatgtccagttctgtagtagagatggaattcataaacaaacatcaactataaccccaaaagaacccgatt 147  T
Q  256 ccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaat 304  Q
     |||||||||||| ||||||||||||| || | | | ||||||||||||    
T  148 tcgtaaacaacatagaggaagaatgaaggggatatcttatcgaggtaat 196  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 31058812 - 31058865
Alignment:
Q  131 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058812 ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc 31058865  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 14543003 - 14543052
Alignment:
Q  162 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14543003 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 14543052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 31058724 - 31058773
Alignment:
Q  74 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058724 tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa 31058773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 4639385 - 4639423
Alignment:
Q  161 gaggagccgtatgaggtgaaaatctcatgtacggttctg 199  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  4639385 gaggagccgtatgagatgaaaatctcacgtacggttctg 4639423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 265217 - 265168
Alignment:
Q  162 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 211  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  265217 aggagccgtatgaggtgaaaatcttatgtacggttctgtaatagagatgg 265168  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 6930438 - 6930487
Alignment:
Q  162 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 211  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6930438 aggagccgtatgaggtgaaaatctcatgtacggttctgtattagagatgg 6930487  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 1399882 - 1399923
Alignment:
Q  160 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 201  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  1399882 cgaggagtcgtatgaggtgaaaatctcatgtacggttctgta 1399923  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 18961072 - 18961112
Alignment:
Q  160 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 201  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18961072 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18961112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 18993033 - 18993073
Alignment:
Q  160 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 201  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  18993033 cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta 18993073  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 19153829 - 19153780
Alignment:
Q  162 aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19153829 aggagccgtacgaggtgaaaatctcatgtacggttctgtaatagagatgg 19153780  T

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Target: scaffold0625 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 8664 - 8623
Alignment:
Q  160 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 201  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8664 cgaggagccgtatgaggtgaaaatctcatgtacggttctgta 8623  T

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Target: scaffold0330 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 43 - 88
Target Start/End: Complemental strand, 13478 - 13433
Alignment:
Q  43 tccatatttggttctatatcaaagcaagatatacaaatttctaata 88  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  13478 tccatatttggttctatatcaaagcaaaatatacaaatttctaata 13433  T

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Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 13412 - 13377
Alignment:
Q  88 atgtcaaaaaatcccgcgattgtattctattttaaa 123  Q
    ||||||||||||| ||||||||||||||||||||||    
T  13412 atgtcaaaaaatctcgcgattgtattctattttaaa 13377  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 17442435 - 17442387
Alignment:
Q  163 ggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg 211  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17442435 ggagccgtacgaggtgaaaatctcatgtacggttttgtaatagagatgg 17442387  T

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Target: scaffold0477 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 8731 - 8693
Alignment:
Q  161 gaggagccgtatgaggtgaaaatctcatgtacggttctg 199  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  8731 gaggagccgtatgagatgaaaatctcacgtacggttctg 8693  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 31266029 - 31265991
Alignment:
Q  161 gaggagccgtatgaggtgaaaatctcatgtacggttctg 199  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  31266029 gaggagccgtatgagatgaaaatctcacgtacggttctg 31265991  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 49771397 - 49771361
Alignment:
Q  162 aggagccgtatgaggtgaaaatctcatgtacggttct 198  Q
    |||||||||||||||||||||||| |||||| |||||    
T  49771397 aggagccgtatgaggtgaaaatcttatgtacagttct 49771361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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