View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13762_high_7 (Length: 341)
Name: NF13762_high_7
Description: NF13762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13762_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 42208490 - 42208162
Alignment:
| Q |
13 |
aaaattcaaaggggaaattgaacaatattactaaaacagtacagccacattctcatgttagatattatgatttacgagaattagcatacacctctatctt |
112 |
Q |
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| T |
42208490 |
aaaattcaaaggggaaattgaacaatattactaaaacagtacagtcacattctcatgttagatattatgatttacgagaattagcatacacctctatctt |
42208391 |
T |
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| Q |
113 |
aaatttgagagatgaaatcacagagaaaatatttctacttgcgggtgcaatctgtaaatacttgaaattgcattgaaggcctgaatcaaacctttacatt |
212 |
Q |
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| T |
42208390 |
aaatttgagagatgaaatcacagagaaaatatttctacttgcgggtgcaatctgtaaatacttgaaattgcattgaaggcctgaatcaaacctttacatt |
42208291 |
T |
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| Q |
213 |
atgaatgaagagtttgtaatgcattttactttgtggtcattgattaaaacaaagtaagcatgtttggtatcacggtgagtttgtaaaatttgccgaaatg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208290 |
atgaatgaagagtttgtaatgcattttactttgtggtcattgattaaaacaaagtaagcatgtttggtatcacggtgagtttgtaaaatttgccgaaatg |
42208191 |
T |
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| Q |
313 |
attttgccaacccaactaaattgcaaata |
341 |
Q |
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|||| |||||||||||||||| ||||||| |
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| T |
42208190 |
atttcgccaacccaactaaatggcaaata |
42208162 |
T |
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