View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_108 (Length: 359)
Name: NF13763_high_108
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_108 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 51051438 - 51051093
Alignment:
| Q |
1 |
atttcatgttgaaggtctgtgttggctgatgtcctccagacacagaatgtgaaaaatctttgttcacttttagttgttctctccaaagaagctgcaaaga |
100 |
Q |
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| T |
51051438 |
atttcatgttgaaggtctgtgctggctgatgtcctccagacacagaatgtgaaaaatctttgttcacttttagttgttctctccaaagaagctgcaaaga |
51051339 |
T |
|
| Q |
101 |
caaatgcaggttttgactaacacatggatgaacactctatattcatcttatagtaatttgatgtatctactttgtggtggacgattgagaatgtttatgt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51051338 |
caaatgcaggttttgactaacacgtggatgaacactctatattcatcttatagtaatttgatgtatctactttgtggtggacgattgagaatgtttatgt |
51051239 |
T |
|
| Q |
201 |
tttcatttgcaaac--tccaaattttatgctgctaggacatttatttaagtaagcataagtgttcttttgaacttcaatatttgtatttattttctattc |
298 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51051238 |
tttcatttgcaaactttccaaattttatgctgctaggacatttatttaagtaagcataagtgttcttttgaacttcaatatttgtatttattttctattc |
51051139 |
T |
|
| Q |
299 |
tctatcttttcacccgtcccctactttttcacacatttgatctgtg |
344 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51051138 |
tgtatcttttcacccgtcccctactttttcacacatttgatctgtg |
51051093 |
T |
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