View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_high_112 (Length: 339)

Name: NF13763_high_112
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_high_112
NF13763_high_112
[»] chr4 (7 HSPs)
chr4 (238-329)||(29847884-29847975)
chr4 (246-310)||(1745448-1745511)
chr4 (246-296)||(20650006-20650055)
chr4 (246-284)||(30257444-30257482)
chr4 (242-279)||(21121654-21121691)
chr4 (247-283)||(53813910-53813946)
chr4 (246-281)||(25100393-25100428)
[»] chr6 (3 HSPs)
chr6 (248-330)||(6257243-6257324)
chr6 (247-283)||(30892321-30892357)
chr6 (195-279)||(31303998-31304075)
[»] chr5 (2 HSPs)
chr5 (246-284)||(24099443-24099481)
chr5 (246-283)||(12566923-12566960)
[»] chr8 (2 HSPs)
chr8 (246-283)||(41940096-41940133)
chr8 (238-279)||(5950139-5950180)
[»] chr1 (4 HSPs)
chr1 (246-283)||(8326998-8327035)
chr1 (238-283)||(18628967-18629012)
chr1 (238-283)||(25023486-25023531)
chr1 (238-283)||(50959523-50959568)
[»] chr2 (5 HSPs)
chr2 (246-310)||(5136200-5136263)
chr2 (195-310)||(39711673-39711786)
chr2 (238-283)||(9848114-9848159)
chr2 (254-322)||(39228919-39228987)
chr2 (247-283)||(8216773-8216809)
[»] chr3 (1 HSPs)
chr3 (246-274)||(28180528-28180556)


Alignment Details
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 238 - 329
Target Start/End: Complemental strand, 29847975 - 29847884
Alignment:
Q  238 gttactggcgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaaactgttgtttttggtggattgacctcttcaattctc 329  Q
    |||||||||| |||  ||||||||||| |||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||    
T  29847975 gttactggcgcatttgactcatccctcgatctgagtttttacgcgtctgctttgaaaccgtagtgtttggtggattgacctcttcgattctc 29847884  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 1745448 - 1745511
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaaactgttgtttttggtgg 310  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||||||    
T  1745448 cgtattggactcatccctcaatctgagttcttacgcgtct-cttggaaactgttgtgtttggtgg 1745511  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 20650006 - 20650055
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaaact 296  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||||||||    
T  20650006 cgtattgaactcatccctcaatctgagttcttacgcatctg-tttgaaact 20650055  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 30257444 - 30257482
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgcgtc 284  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  30257444 cgtattgaactcatccctcgatctgagtttttacgcgtc 30257482  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 21121654 - 21121691
Alignment:
Q  242 ctggcgtattgaactcatccctcaatctgagtttttac 279  Q
    |||||||||||||||||||||||||| |||||||||||    
T  21121654 ctggcgtattgaactcatccctcaatttgagtttttac 21121691  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 53813946 - 53813910
Alignment:
Q  247 gtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    |||||||||||||||||| ||||||||||||||||||    
T  53813946 gtattgaactcatccctcgatctgagtttttacgcgt 53813910  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 281
Target Start/End: Original strand, 25100393 - 25100428
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgc 281  Q
    ||||||||||||||||||| ||||||||||||||||    
T  25100393 cgtattgaactcatccctcgatctgagtttttacgc 25100428  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 330
Target Start/End: Original strand, 6257243 - 6257324
Alignment:
Q  248 tattgaactcatccctcaatctgagtttttacgcgtctgctttgaaactgttgtttttggtggattgacctcttcaattctct 330  Q
    ||||| ||||||||||| ||||||||| |||||||| || |||||||||||||| ||||||||  |||  | |||||||||||    
T  6257243 tattggactcatccctcgatctgagttcttacgcgtttg-tttgaaactgttgtgtttggtggtatgattttttcaattctct 6257324  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 30892357 - 30892321
Alignment:
Q  247 gtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30892357 gtattgaactcatccctcgatctgagtttttacgcgt 30892321  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 31303998 - 31304075
Alignment:
Q  195 cgaaagagtctggttccgttaatccgaaagggtctgtagttacgttactggcgtattgaactcatccctcaatctgagtttttac 279  Q
    ||||||||| ||||||  |||| |||||||||||||       ||||||| ||||||||||||||||||| ||||||||| ||||    
T  31303998 cgaaagagtttggttcgattaacccgaaagggtctg-------gttactgacgtattgaactcatccctcgatctgagttcttac 31304075  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 24099443 - 24099481
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgcgtc 284  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  24099443 cgtattgaactcatccctcgatctgagtttttacgcgtc 24099481  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 12566923 - 12566960
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12566923 cgtattgaactcatccctcgatctgagtttttacgcgt 12566960  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 41940133 - 41940096
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  41940133 cgtattgaactcatccctcgatctgagtttttacgcgt 41940096  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 5950180 - 5950139
Alignment:
Q  238 gttactggcgtattgaactcatccctcaatctgagtttttac 279  Q
    ||||||| ||||||||||||||||||| || |||||||||||    
T  5950180 gttactgacgtattgaactcatccctcgatttgagtttttac 5950139  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 283
Target Start/End: Complemental strand, 8327035 - 8326998
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  8327035 cgtattgaactcatccctcgatctgagtttttacgcgt 8326998  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 18629012 - 18628967
Alignment:
Q  238 gttactggcgtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  18629012 gttactgacgtattggactcatccctcaatctgagttcttacgcgt 18628967  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 25023531 - 25023486
Alignment:
Q  238 gttactggcgtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    ||||||| ||||||| | |||||||||||| |||||||||||||||    
T  25023531 gttactgacgtattggattcatccctcaatttgagtttttacgcgt 25023486  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Complemental strand, 50959568 - 50959523
Alignment:
Q  238 gttactggcgtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    ||||||| ||||||| ||||||||||| ||||||||| ||||||||    
T  50959568 gttactgacgtattggactcatccctcgatctgagttcttacgcgt 50959523  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 5136200 - 5136263
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaaactgttgtttttggtgg 310  Q
    ||||||| ||||||||||| ||||||||| ||||||||||| || ||||| ||||| ||||||||    
T  5136200 cgtattggactcatccctcgatctgagttcttacgcgtctg-ttggaaaccgttgtatttggtgg 5136263  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 39711786 - 39711673
Alignment:
Q  195 cgaaagagtctggttccgttaat-ccgaaagggtctgtagttacgttactggcgtattgaactcatccctcaatctgagtttttacgcgtctgctttgaa 293  Q
    |||||| |||||||||||||||| ||||||||||||||   |  ||||||  ||||||||||||||  || ||| ||||||||||||| ||||  |||||    
T  39711786 cgaaagggtctggttccgttaataccgaaagggtctgt---ttggttactaacgtattgaactcattactaaatttgagtttttacgcatctg-attgaa 39711691  T
Q  294 act-gttgtttttggtgg 310  Q
    ||| ||||| ||||||||    
T  39711690 actggttgtgtttggtgg 39711673  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 9848114 - 9848159
Alignment:
Q  238 gttactggcgtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    ||||||| ||||||| ||||||||||| ||||||||| ||||||||    
T  9848114 gttactgacgtattggactcatccctcgatctgagttcttacgcgt 9848159  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 322
Target Start/End: Original strand, 39228919 - 39228987
Alignment:
Q  254 actcatccctcaatctgagtttttacgcgtctgctttgaaactg-ttgtttttggtggattgacctcttc 322  Q
    ||||||||||| ||||||||| ||||||||||| | |||||||| |||| |||||||| ||||| |||||    
T  39228919 actcatccctcgatctgagttcttacgcgtctg-tctgaaactgcttgtgtttggtggtttgacttcttc 39228987  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 8216809 - 8216773
Alignment:
Q  247 gtattgaactcatccctcaatctgagtttttacgcgt 283  Q
    |||||||||||||||||  ||||||||||||||||||    
T  8216809 gtattgaactcatcccttgatctgagtttttacgcgt 8216773  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 274
Target Start/End: Complemental strand, 28180556 - 28180528
Alignment:
Q  246 cgtattgaactcatccctcaatctgagtt 274  Q
    |||||||||||||||||||||||||||||    
T  28180556 cgtattgaactcatccctcaatctgagtt 28180528  T

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