View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_high_114 (Length: 333)
Name: NF13763_high_114
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_high_114 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 3 - 314
Target Start/End: Original strand, 34344678 - 34344989
Alignment:
| Q |
3 |
gaataaaatcaatccaaatgatgtaaaaattaaaattgaacaagtaataggtaattaatacatacgagaatatccaaggtggctccaaatttgtctttga |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344678 |
gaataaaatcaatccaaatgatgtaaaaattaaaattgaacaaataataggtaattaatacatacgagaatatccaaggtggctccaaatttgtctttga |
34344777 |
T |
|
| Q |
103 |
aggaggatgcaaaggtttgaatagaatcagcatctgagacatcaaggactagaaagtgaacatgatgatgaggtgcaacaaggcctaattgtgctcgaat |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344778 |
aggaggatgcaaaggttttaatagaatcagcatctgagacatcaaggactagaaagtgaacatgatgatgaggtgcaacaaggcctaattgtgctcgaat |
34344877 |
T |
|
| Q |
203 |
catctccacagcatcctctcctttcttcttgtctctagcagttaacactacactcagtcccaactcagcaaaacgtttcacaagagcaaacccaatgccc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34344878 |
tctctccacagcatcctctcctttcttcttgtctctagcagttaacactacactcagtcccaactcagcaaaacgtttcacaagagcaaacccaatgccc |
34344977 |
T |
|
| Q |
303 |
ttgtttcctcct |
314 |
Q |
| |
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|||||||||||| |
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| T |
34344978 |
ttgtttcctcct |
34344989 |
T |
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